API for flowStats
Statistical methods for the analysis of flow cytometry data
| Global functions | |
|---|---|
| %in%,flowFrame,curv1Filter-method | Man page |
| %in%,flowFrame,curv2Filter-method | Man page |
| %in%,flowFrame,lymphFilter-method | Man page |
| %in%,flowFrame,norm2Filter-method | Man page |
| %in%,flowFrame,rangeFilter-method | Man page |
| .calcReference | Source code |
| .centerFigure | Source code |
| .checkChannel | Source code |
| .checkFeatureNum | Source code |
| .classifyFeatures | Source code |
| .combTransMatrix | Source code |
| .filterOutlier | Source code |
| .getMinMaxRange | Source code |
| .getSVD | Source code |
| .getTranslationMatrix | Source code |
| .normalizeGatingSet | Source code |
| .plotGPAprocess | Source code |
| .plotWorkFlow | Source code |
| .rotateOnly | Source code |
| .translate | Source code |
| .translateFeatures | Source code |
| .useDivCluster | Source code |
| .usingSVD | Source code |
| BackGating | Man page |
| ITN | Man page |
| addName,curv1Filter,character-method | Man page |
| addName,curv1Filter,logical-method | Man page |
| addName,curv2Filter,character-method | Man page |
| addName,curv2Filter,logical-method | Man page |
| area.in.polygon | Source code |
| autoGate | Man page Source code |
| backGating | Source code |
| best.match | Source code |
| binByRef | Man page Source code |
| calcPBChiSquare | Man page Source code |
| calcPearsonChi | Man page Source code |
| choose.nk | Source code |
| combinations.itr | Source code |
| combinePols | Source code |
| comparativeNormalizationPlot | Source code |
| compute.confidence | Source code |
| computeOverlap | Source code |
| curv1Filter | Man page Source code |
| curv1Filter-class | Man page |
| curv2Filter | Man page Source code |
| curv2Filter-class | Man page |
| curvPeaks | Man page Source code |
| curvRegs | Source code |
| density1d | Man page Source code |
| density1d_simple | Source code |
| dfltCounts | Source code |
| drvkde | Source code |
| extract.base.landmarks | Source code |
| extract.landmarks | Source code |
| extract.landmarksNC | Source code |
| fdPar | Man page |
| filter.lms | Source code |
| flowStats | Man page |
| flowStats-package | Man page |
| gateHasSufficientData | Source code |
| gate_singlet | Man page Source code |
| gau | Source code |
| gaussNorm | Man page Source code |
| getPeakRegions | Source code |
| getProportions | Source code |
| getRegions | Source code |
| getSubsets | Source code |
| gpaSet | Man page Source code |
| hdMat | Source code |
| iProcrustes | Man page Source code |
| idFeatures | Man page |
| idFeaturesByBackgating | Man page Source code |
| landmarkMatrix | Man page Source code |
| landmarkMatrixWithoutFilterResult | Source code |
| landmarker | Source code |
| lymphFilter | Man page Source code |
| lymphFilter-class | Man page |
| lymphGate | Man page Source code |
| match.all.lms | Source code |
| match.score | Source code |
| norm2Filter | Man page Source code |
| norm2Filter-class | Man page |
| normApprox | Source code |
| normQA | Man page Source code |
| normalize | Man page |
| normalize,GatingSet,missing-method | Man page |
| normalize,GatingSetInternal,missing-method | Man page |
| normalize-methods | Man page |
| normalize.one.expr | Source code |
| normalize.one.exprNC | Source code |
| oneDGate | Man page Source code |
| overton_like | Man page Source code |
| peakSeparator | Source code |
| plotAllGates | Source code |
| plotBins | Man page Source code |
| plotSameGate | Source code |
| plotting | Source code |
| print.GPA | Source code |
| proBin | Man page Source code |
| pruneRegions | Source code |
| quadrantGate | Man page Source code |
| rangeFilter | Man page Source code |
| rangeFilter-class | Man page |
| rangeGate | Man page Source code |
| register.channel | Source code |
| register.function | Source code |
| remBoundary | Source code |
| remBoundaryNC | Source code |
| restoreBoundary | Source code |
| restoreBoundaryNC | Source code |
| returny | Source code |
| score.lms | Source code |
| show,curv1Filter-method | Man page |
| show,curv2Filter-method | Man page |
| show,norm2Filter-method | Man page |
| singletGate | Man page |
| spillover | Man page |
| spillover,flowSet-method | Man page |
| spillover-flowSet | Man page |
| spillover_match | Man page |
| spillover_match,flowSet-method | Man page |
| spillover_match,missing-method | Man page |
| spillover_match-flowSet | Man page |
| spillover_ng | Man page |
| spillover_ng,flowSet-method | Man page |
| spillover_ng,missing-method | Man page |
| spillover_ng-flowSet | Man page |
| summarizeFilter,multipleFilterResult,curv1Filter-method | Man page |
| summarizeFilter,multipleFilterResult,curv2Filter-method | Man page |
| symconv2D.ks | Source code |
| symconv3D.ks | Source code |
| symconv4D.ks | Source code |
| warpSet | Man page Source code |
| warpSet.GatingSet | Source code |
| warpSet.cytoset | Man page Source code |
| warpSet.default | Source code |
| warpSet.flowSet | Source code |
| warpSet.ncdfFlowSet | Source code |
| warpSetGS | Man page |
| warpSetNCDF | Man page |
| warpSetNCDFLowMem | Man page |
