autoGate: Automated gating of single populations in 2D

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/autoGate.R

Description

This function tries to fit a single norm2Filter based on a rough preselection of the data. This function is considered internal. Please use the API provided by lymphGate.

Usage

1
autoGate(x, ..., scale = 2.5)

Arguments

x

An object of class flowSet

...

Named arguments or a list of the ranges used for the initial rough preselection. This gets passed on to rectangleGate, see it's documentation for details.

scale

The scale parameter that gets passed on to norm2Filter.

Details

The flowSet is first filtered using a rectangleGate and the norm2Filter is subsequently fitted to the remaining subset.

Value

A list with items:

x

The filtered flowSet.

n2gate

The norm2Filter object.

n2gateResults

The filterResult after applying the norm2Filter on the flowSet.

Author(s)

Florian Hahne

See Also

lymphGate, norm2Filter

Examples

1
2
3
library(flowCore)
data(GvHD)
flowStats:::autoGate(GvHD[10:15], "FSC-H"=c(100,500), "SSC-H"=c(0, 400))

flowStats documentation built on Nov. 8, 2020, 6:49 p.m.