flowTrans-package: Parameter Optimization for Flow Cytometry Data Transformation

In flowTrans: Parameter Optimization for Flow Cytometry Data Transformation

Description

Maximum likelihood estimation of parameters for common flow cytometry data transformations.

Details

Package:	flowTrans
Type:	Package
Version:	0.6.0
Date:	2010-03-25
License:	Artistic-2.0
LazyLoad:	yes
biocViews:	Bioinformatics, FlowCytometry
Depends:	flowCore, methods
Imports:	flowCore, methods, stats, flowViz, flowClust
Collate:	logicleTransformWrapper.R mclMultivArcSinh.R mclMultivBiexp.R mclMultivLinLog.R mclMultivBoxCox.R arcsinhTransformWrapper.R biexponentialTransformWrapper.R boxcoxTransform.R flowTrans.R linLog.R
Packaged:	2010-03-25 16:49:03 UTC; finak
Built:	R 2.10.0; ; 2009-11-30 16:49:05 UTC; unix

Index:

flowTrans               Optimizing transformations for flow cytometry
                        data

Author(s)

Greg Finak <[e-mail]>, Juan Manuel-Perez <[e-mail]>, Raphael Gottardo <[e-mail]>

Maintainer: Greg Finak <[e-mail]>

References

Finak G, Perez J M, Weng A, Gottardo R. Optimizing Transformations for Flow Cytometry. (Submitted)

Examples

#Load some data
data(GvHD)
#transform the first sample, forward and side scatter.
result<-flowTrans(GvHD[[1]],"mclMultivArcSinh",colnames(GvHD[[1]])[1:2],n2f=FALSE,parameters.only=FALSE);
plot(result$result);
summary(result);

flowTrans documentation built on Nov. 8, 2020, 8:04 p.m.