flowTrans-package: Parameter Optimization for Flow Cytometry Data Transformation

Description Details Author(s) References Examples

Description

Maximum likelihood estimation of parameters for common flow cytometry data transformations.

Details

Package: flowTrans
Type: Package
Version: 0.6.0
Date: 2010-03-25
License: Artistic-2.0
LazyLoad: yes
biocViews: Bioinformatics, FlowCytometry
Depends: flowCore, methods
Imports: flowCore, methods, stats, flowViz, flowClust
Collate: logicleTransformWrapper.R mclMultivArcSinh.R mclMultivBiexp.R mclMultivLinLog.R mclMultivBoxCox.R arcsinhTransformWrapper.R biexponentialTransformWrapper.R boxcoxTransform.R flowTrans.R linLog.R
Packaged: 2010-03-25 16:49:03 UTC; finak
Built: R 2.10.0; ; 2009-11-30 16:49:05 UTC; unix

Index:

1
2
flowTrans               Optimizing transformations for flow cytometry
                        data

Author(s)

Greg Finak <[email protected]>, Juan Manuel-Perez <[email protected]>, Raphael Gottardo <[email protected]>

Maintainer: Greg Finak <[email protected]>

References

Finak G, Perez J M, Weng A, Gottardo R. Optimizing Transformations for Flow Cytometry. (Submitted)

Examples

1
2
3
4
5
6
#Load some data
data(GvHD)
#transform the first sample, forward and side scatter.
result<-flowTrans(GvHD[[1]],"mclMultivArcSinh",colnames(GvHD[[1]])[1:2],n2f=FALSE,parameters.only=FALSE);
plot(result$result);
summary(result);

flowTrans documentation built on Nov. 1, 2018, 3:33 a.m.