| $,Genome_intervals-method |
Man page
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| $<-,Genome_intervals-method |
Man page
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| .readGff3 |
Man page
Source code
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| GenomeIntervals |
Man page
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| GenomeIntervals-constructor |
Man page
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| Genome_intervals deprecated functions |
Man page
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| Genome_intervals-class |
Man page
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| Genome_intervals-ordering |
Man page
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| Genome_intervals_stranded-class |
Man page
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| [,Genome_intervals,ANY-method |
Man page
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| [,Genome_intervals-method |
Man page
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| [<-,Genome_intervals,ANY,missing,Genome_intervals-method |
Man page
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| [[,Genome_intervals,ANY,ANY-method |
Man page
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| [[,Genome_intervals,ANY-method |
Man page
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| [[,Genome_intervals-method |
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| [[<-,Genome_intervals,ANY,ANY-method |
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| [[<-,Genome_intervals,ANY-method |
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| [[<-,Genome_intervals-method |
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| annotation |
Man page
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| annotation,Genome_intervals-method |
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| annotation<- |
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| annotation<-,Genome_intervals-method |
Man page
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| as |
Man page
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| as,Genome_intervals,GRangesList-method |
Man page
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| as,Genome_intervals-method |
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| c |
Man page
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| c,Genome_intervals-method |
Man page
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| c,Genome_intervals_stranded-method |
Man page
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| coerce,Genome_intervals,GRanges-method |
Man page
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| coerce,Genome_intervals,GRangesList-method |
Man page
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| coerce,Genome_intervals,Intervals_full-method |
Man page
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| coerce,Genome_intervals,character-method |
Man page
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| coerce,Genome_intervals,data.frame-method |
Man page
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| coerce,Genome_intervals_stranded,character-method |
Man page
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| commonCombination |
Source code
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| core_annotated |
Man page
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| core_annotated,Genome_intervals-method |
Man page
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| core_annotated,Genome_intervals_stranded-method |
Man page
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| distance_to_nearest |
Man page
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| distance_to_nearest,Genome_intervals,Genome_intervals-method |
Man page
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| distance_to_nearest,Genome_intervals_stranded,Genome_intervals_s |
Man page
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| extract |
Source code
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| gen_ints |
Man page
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| genomeIntervals |
Man page
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| genomeIntervals coercion methods |
Man page
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| genomeIntervals-package |
Man page
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| getGffAttribute |
Man page
Source code
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| i |
Man page
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| inter_base |
Man page
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| inter_base,Genome_intervals-method |
Man page
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| inter_base<- |
Man page
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| inter_base<-,Genome_intervals-method |
Man page
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| interval_complement |
Man page
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| interval_complement,Genome_intervals-method |
Man page
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| interval_complement,Genome_intervals_stranded-method |
Man page
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| interval_intersection |
Man page
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| interval_intersection,Genome_intervals-method |
Man page
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| interval_intersection,Genome_intervals_stranded-method |
Man page
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| interval_overlap |
Man page
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| interval_overlap,ANY,missing-method |
Man page
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| interval_overlap,Genome_intervals,Genome_intervals-method |
Man page
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| interval_overlap,Genome_intervals_stranded,Genome_intervals_stra |
Man page
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| interval_overlap,missing,ANY-method |
Man page
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| interval_union |
Man page
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| interval_union,Genome_intervals-method |
Man page
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| interval_union,Genome_intervals_stranded-method |
Man page
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| intervalsForDistance |
Source code
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| intervalsForOverlap |
Source code
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| j |
Man page
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| k |
Man page
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| order |
Man page
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| order,Genome_intervals-method |
Man page
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| order,Genome_intervals_stranded-method |
Man page
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| parseGffAttributes |
Man page
Source code
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| rank |
Man page
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| rank,Genome_intervals-method |
Man page
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| rank,Genome_intervals_stranded-method |
Man page
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| readBasePairFeaturesGff3 |
Man page
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| readBasePairFeaturesGff3,character-method |
Man page
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| readGff3 |
Man page
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| readGff3,character-method |
Man page
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| readZeroLengthFeaturesGff3 |
Man page
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| readZeroLengthFeaturesGff3,character-method |
Man page
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| seq_name |
Man page
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| seq_name,Genome_intervals-method |
Man page
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| seq_name<- |
Man page
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| seq_name<-,Genome_intervals-method |
Man page
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| seqnames,Genome_intervals-method |
Man page
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| seqnames<-,Genome_intervals-method |
Man page
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| show,Genome_intervals-method |
Man page
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| size,Genome_intervals-method |
Man page
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| sort |
Man page
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| sort,Genome_intervals-method |
Man page
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| sort,Genome_intervals_stranded-method |
Man page
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| strand |
Man page
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| strand,Genome_intervals_stranded-method |
Man page
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| strand<- |
Man page
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| strand<-,Genome_intervals_stranded,ANY-method |
Man page
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| strand<-,Genome_intervals_stranded-method |
Man page
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| type<-,Genome_intervals-method |
Man page
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| which_nearest,Genome_intervals,Genome_intervals-method |
Man page
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| width,Genome_intervals-method |
Man page
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| writeGff3 |
Man page
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| writeGff3,Genome_intervals-method |
Man page
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| writeGff3,data.frame-method |
Man page
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| xtfrm |
Man page
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| xtfrm,Genome_intervals-method |
Man page
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| xtfrm,Genome_intervals_stranded-method |
Man page
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