Genome and assembly reports

Share:

Description

Genome and assembly reports from the NCBI genomes FTP

Usage

1
reports(file, assembly = FALSE, ...)

Arguments

file

file name, if missing then the files in the FTP directory are listed

assembly

use ASSEMBLY_REPORTS directory, default is GENOME_REPORTS

...

additional options passed to read_delim

Details

Uses read_delim in the readr package to read genome or assembly reports in the genomes FTP

Value

A list of files if file name is missing, otherwise a data.frame with class c("tbl_df", "tbl", "data.frame"). If dplyr is loaded, then printing will return the first ten rows and not the first 10,000.

Author(s)

Chris Stubben

References

See ftp://ftp.ncbi.nih.gov/genomes/GENOME_REPORTS and ftp://ftp.ncbi.nih.gov/genomes/ASSEMBLY_REPORTS

Examples

1
2
3
4
5
reports()
## Not run: 
proks <- reports("prokaryotes.txt") 

## End(Not run)

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.