Files in girafe
Genome Intervals and Read Alignments for Functional Exploration
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
src/girafe_init.c
src/coverage.cpp
src/girafe.h
R/fracOverlap.R
R/perWindow.R
R/util.R
R/coverageFun.R
R/negbinom.R
R/countReadsAnnotated.R
R/AllGenerics.R
R/export.R
R/whichNearestMethods.R
R/plotAllChrom.R
R/input.R
R/reduceMethod.R
R/overlap.R
R/plotAligned.R
R/zzz.R
R/genome_intervals_extensions.R
R/trimAdapter.R
R/includedMethod.R
R/intPhred.R
R/alignedGenomeIntervals.R
vignettes/girafe.Rnw
vignettes/girafe.tex
vignettes/ngs.bib
vignettes/Makefile
man/reduce-extras.Rd
man/agiFromBam.Rd
man/getFeatureCounts.Rd
man/plotAligned.Rd
man/negbinomsig.Rd
man/weightedConsensusMatrix.Rd
man/whichNearestMethods.Rd
man/plotnegbinomfit.Rd
man/fracOverlap.Rd
man/trimAdapter.Rd
man/medianByPosition.Rd
man/countReadsAnnotated.Rd
man/AlignedGenomeIntervals-class.Rd
man/girafe-internal.Rd
man/perWindow.Rd
man/intPhred.Rd
man/plotReads.Rd
inst/CITATION
inst/doc/girafe.Rnw
inst/doc/girafe.R
inst/doc/girafe.pdf
inst/extdata/aravinSRNA_23_no_adapter_excerpt_mm9_unmasked.bwtmap
inst/extdata/mgi_gi.RData
inst/extdata/aravinSRNA_23_plus_adapter_excerpt.fastq
inst/scripts/readAlignedExtras.R
inst/scripts/colourspace.R
inst/scripts/prepareAnnotation.R
