goSTAG_go_genes_human: goSTAG GO Genes (Human)

In goSTAG: A tool to use GO Subtrees to Tag and Annotate Genes within a set

Description

A list of GO terms and the human genes associated with them.

Usage

data(goSTAG_go_genes_human)

Details

This data is meant for internal goSTAG use.

Value

A list of vectors. Each element of the list corresponds to a GO term, and each vector contains the genes associated with the GO term. The list also has an additional element named "ALL", which is a vector that contains all annotated genes.

Author(s)

Brian D. Bennett
Pierre R. Bushel

References

Bennett BD and Bushel PR. goSTAG: Gene Ontology Subtrees to Tag and Annotate Genes within a set. Source Code Biol Med. 2017 Apr 13.

Examples

data( goSTAG_go_genes_human )
lapply( head( goSTAG_go_genes_human ), head )

Example output

$`GO:0006810`
[1] "SLC25A26" "GJA3"     "GJB2"     "HERC1"    "SLC35A2"  "BAG6"    

$`GO:0048011`
[1] "BTC"   "FGF7"  "FURIN" "APH1B" "NDN"   "AGO2" 

$`GO:0007173`
[1] "BTC"     "FGF7"    "AGO2"    "FGF9"    "MAPKAP1" "FGF2"   

$`GO:0008543`
[1] "BTC"     "FGF7"    "AGO2"    "FGF9"    "MAPKAP1" "FGF2"   

$`GO:0048015`
[1] "BTC"     "FGF7"    "UBE2C"   "AGO2"    "FGF9"    "MAPKAP1"

$`GO:0008284`
[1] "BTC"   "FGF7"  "EDN3"  "RPS4X" "AVP"   "FGF9" 

goSTAG documentation built on Nov. 8, 2020, 7:45 p.m.