gprege-package: gprege - Gaussian Process Ranking and Estimation of Gene...

Description Details Author(s) References See Also Examples

Description

This package implements the method of Kalaitzis and Lawrence (2011) for Gaussian process modelling gene expression time-series data. The method can be used to filter quiet genes and quantify differential expression in time-series expression ratios.

Details

Package: gprege
Type: Package
Version: 0.99.0
Date: 2011-07-08
License: A-GPL Version 3

For details of using the package please refer to the Vignette.

Author(s)

Alfredo Kalaitzis

Maintainer: Alfredo Kalaitzis <alkalait@gmail.com>

References

A.~A.~Kalaitzis and N.~D.~Lawrence. A Simple Approach to Ranking Differentially Expressed Gene Expression Time Courses through Gaussian Process Regression BMC Bioinformatics 2011, 12:180. DOI:10.1186/1471-2105-12-180.

See Also

demGpCov2D, demGpSample, demInterpolation, demOptimiseGp, demRegression

Examples

1
## see demTp63Gp1.R

gprege documentation built on Nov. 8, 2020, 7:48 p.m.