acc-methods | Methods for Accessibility Lists |
addEdge | addEdge |
addNode | addNode |
adjacencyMatrix | Compute an Adjacency Matrix for a graphBAM object |
adj-methods | Methods for finding the adjacency list for selected nodes. |
apoptosisGraph | KEGG apoptosis pathway graph |
attrData-class | Class "attrData" |
attrDataItem-methods | Get and set attributes values for items in an attrData object |
attrDefaults-methods | Get and set the default attributes of an attrData object |
aveNumEdges | Calculate the average number of edges in a graph |
biocRepos | A graph representing the Bioconductor package repository |
boundary | Returns the Boundary between a Graph and a SubGraph |
calcProb | Calculate the hypergeometric probability of the subgraph's... |
calcSumProb | Calculate the probability that a subgraph has an unusual... |
clearNode | clearNode |
clusterGraph-class | Class "clusterGraph" |
clusteringCoefficient-methods | Clustering coefficient of a graph |
combineNodes | combineNodes |
defunct | Defunct Functions in Package 'graph' |
DFS | Depth First Search |
distGraph-class | Class "distGraph" |
duplicatedEdges | duplicatedEdges |
edgeDataDefaults-methods | Get and set default attributes for the edges of a graph |
edgeData-methods | Get and set attributes for the edges of a graph object |
edgeMatrix | Compute an Edge Matrix or weight vector for a Graph |
edgeSets | MultiGraph edgeSet data |
edgeWeights | Retrieve the edge weights of a graph |
fromGXL-methods | Methods for GXL manipulations in package graph |
graph2SparseM | Coercion methods between graphs and sparse matrices |
graphAM-class | Class "graphAM" |
graphBAM-class | EXPERIMENTAL class "graphBAM" |
graph-class | Class "graph" |
graphExamples | A List Of Example Graphs |
graphNEL-class | Class "graphNEL" |
IMCA | KEGG Integrin Mediated Cell Adhesion graph |
inEdges | Generic Method inEdges |
internal | Variables used for internal purposes |
isAdjacent-methods | Determine if nodes share an edge in a graph |
isDirected-methods | Determine if a graph has directed or undirected edges |
leaves | Find the leaves of a graph |
listEdges | List the Edges of a Graph |
MAPKsig | A graph encoding parts of the MAPK signaling pathway |
matrix2Graph | Coercions between matrix and graph representations |
mostEdges | Find the node in a graph with the greatest number of edges |
multigraph | Class "multiGraph" |
MultiGraph-class | EXPERIMENTAL class "MultiGraph" |
nodeDataDefaults-methods | Get and set default attributes for the nodes of a graph |
nodeData-methods | Get and set attributes for the nodes of a graph object |
numNoEdges | Calculate the number of nodes that have an edge list of NULL |
pancrCaIni | A graph encoding parts of the pancreatic cancer initiation... |
randomEGraph | Random Edge Graph |
randomGraph | Random Graph |
randomNodeGraph | Generate Random Graph with Specified Degree Distribution |
removeEdge | removeEdge |
removeNode | removeNode |
renderInfo-class | Class "renderInfo" |
reverseEdgeDirections | Reverse the edges of a directed graph |
settings | Graphical parameters and other settings |
simpleEdge-class | Class "simpleEdge". |
standardLabeling | Standard labeling of edges with integers |
subGraph | Create a Subgraph |
toDotR-methods | Methods for Function toDotR, using R to generate a dot... |
toDotWithRI | Translate a graph to "dot" including rendering information |
ugraph | Underlying Graph |
validGraph | Test whether graph object is valid |
write.tlp | Write a graph object in a file in the Tulip format |
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