API for heatmaps
Flexible Heatmaps for Functional Genomics and Sequence Features
| Global functions | |
|---|---|
| CoverageHeatmap | Man page |
| CoverageHeatmap,GenomicRanges,GenomicRanges-method | Man page |
| CoverageHeatmap,GenomicRanges,RleList-method | Man page |
| Heatmap | Man page Source code |
| Heatmap-class | Man page |
| HeatmapExamples | Man page |
| PWMScanHeatmap | Man page |
| PWMScanHeatmap,DNAStringSet,matrix-method | Man page |
| PatternHeatmap | Man page |
| PatternHeatmap,DNAStringSet,character-method | Man page |
| PatternHeatmap,DNAStringSet,matrix-method | Man page |
| bin_heatmap | Source code |
| color_error | Source code |
| coords | Man page Man page |
| coords,Heatmap-method | Man page |
| coords<- | Man page |
| coords<-,Heatmap-method | Man page |
| default_color | Man page Source code |
| detect_algorithm | Source code |
| expand_options | Source code |
| gaussianFilter | Source code |
| getScale | Man page Source code |
| get_device_params | Source code |
| get_options | Source code |
| gg_col | Source code |
| heatmapOptions | Man page Source code |
| hm | Man page |
| hm2 | Man page |
| image | Man page |
| image,Heatmap-method | Man page |
| image<- | Man page |
| image<-,Heatmap-method | Man page |
| kernelSmooth | Source code |
| label | Man page Man page |
| label,Heatmap-method | Man page |
| label<- | Man page |
| label<-,Heatmap-method | Man page |
| legend_left | Source code |
| legend_right | Source code |
| length,Heatmap-method | Man page |
| makeGaussian2D | Source code |
| make_x_ticks | Source code |
| mat | Man page |
| metadata | Man page Man page |
| metadata,Heatmap-method | Man page |
| metadata<- | Man page |
| metadata<-,Heatmap-method | Man page |
| normalise_scales | Source code |
| nseq | Man page Man page |
| nseq,Heatmap-method | Man page |
| nseq<- | Man page |
| nseq<-,Heatmap-method | Man page |
| plotHeatmap | Man page |
| plotHeatmap,Heatmap-method | Man page |
| plotHeatmapList | Man page Source code |
| plotHeatmapMeta | Man page Source code |
| plotPatternDensityMap | Man page |
| plotPatternDensityMap,DNAStringSet-method | Man page |
| plot_clusters | Man page Source code |
| plot_legend | Man page Source code |
| rev,Heatmap-method | Man page |
| rle_list | Man page |
| scale | Man page Man page |
| scale,Heatmap-method | Man page |
| scale<- | Man page |
| scale<-,Heatmap-method | Man page |
| smoothHeatmap | Man page |
| smoothHeatmap,Heatmap-method | Man page |
| string_set | Man page |
| subset_if_list | Source code |
| tata_pwm | Man page |
| width,Heatmap-method | Man page |
| windows | Man page |
| xm | Man page |
| xm,Heatmap-method | Man page |
| ym | Man page |
| ym,Heatmap-method | Man page |
