iBBiG: Iterative Binary Biclustering of Genesets

iBBiG is a bi-clustering algorithm which is optimizes for binary data analysis. We apply it to meta-gene set analysis of large numbers of gene expression datasets. The iterative algorithm extracts groups of phenotypes from multiple studies that are associated with similar gene sets. iBBiG does not require prior knowledge of the number or scale of clusters and allows discovery of clusters with diverse sizes

AuthorDaniel Gusenleitner, Aedin Culhane
Date of publicationNone
MaintainerAedin Culhane <aedin@jimmy.harvard.edu>
LicenseArtistic-2.0
Version1.18.0
http://bcb.dfci.harvard.edu/~aedin/publications/

View on Bioconductor

Functions

addSignal Man page
analyzeClust Man page
analyzeClust,Biclust,iBBiG-method Man page
analyzeClust,iBBiG,iBBiG-method Man page
analyzeClust,list,iBBiG-method Man page
Clusterscores Man page
Clusterscores<- Man page
Clusterscores,iBBiG-method Man page
iBBiG Man page
iBBiG-class Man page
[,iBBiG-method Man page
iBBiG-package Man page
info Man page
info<- Man page
info,iBBiG-method Man page
JIdist Man page
JIdist,Biclust,Biclust-method Man page
JIdist,Biclust,iBBiG-method Man page
JIdist,iBBiG,iBBiG-method Man page
makeArtificial Man page
makeSimDesignMat Man page
Number Man page
Number<- Man page
Number,iBBiG-method Man page
NumberxCol Man page
NumberxCol<- Man page
NumberxCol,iBBiG-method Man page
Parameters Man page
Parameters<- Man page
Parameters,iBBiG-method Man page
plot,iBBiG,ANY-method Man page
RowScorexNumber Man page
RowScorexNumber<- Man page
RowScorexNumber,iBBiG-method Man page
RowxNumber Man page
RowxNumber<- Man page
RowxNumber,iBBiG-method Man page
Seeddata Man page
Seeddata<- Man page
Seeddata,iBBiG-method Man page
show,iBBiG-method Man page
summary,iBBiG-method Man page

Files

iBBiG/DESCRIPTION
iBBiG/NAMESPACE
iBBiG/R
iBBiG/R/iBBiG.R iBBiG/R/iBBiG_Class.R iBBiG/R/iBBiG_makeSimultedData.R
iBBiG/build
iBBiG/build/vignette.rds
iBBiG/inst
iBBiG/inst/doc
iBBiG/inst/doc/tutorial.R
iBBiG/inst/doc/tutorial.Rnw
iBBiG/inst/doc/tutorial.pdf
iBBiG/man
iBBiG/man/iBBiG-class.Rd iBBiG/man/iBBiG-package.Rd iBBiG/man/iBBiG.Rd iBBiG/man/makeArtificial.Rd
iBBiG/src
iBBiG/src/R_init_iBBiG.c
iBBiG/src/iBBiG.c
iBBiG/src/iBBiG.h
iBBiG/vignettes
iBBiG/vignettes/tutorial.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.