API for iCARE
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)
| Global functions | |
|---|---|
| ModelValidation | Man page Source code |
| PRS_research | Source code |
| bc_72_snps | Man page |
| bc_data | Man page |
| bc_inc | Man page |
| bc_model_cov_info | Man page |
| bc_model_formula | Man page |
| bc_model_log_or | Man page |
| bc_model_log_or_post_50 | Man page |
| call_c1 | Source code |
| call_c2 | Source code |
| check_SNP_info | Source code |
| check_age_inputs | Source code |
| check_age_lengths | Source code |
| check_competing_rates | Source code |
| check_design_matrix | Source code |
| check_disease_rates | Source code |
| check_flexible_rate_inputs | Source code |
| check_model_inputs | Source code |
| check_rates | Source code |
| check_triple_check | Source code |
| combine_risks_two_intervals | Source code |
| comp_AR_compete | Source code |
| comp_Aj | Source code |
| computeAbsoluteRisk | Man page Source code |
| computeAbsoluteRiskSplitInterval | Man page Source code |
| decide_if_SNP_only | Source code |
| format_flexible_rate_inputs | Source code |
| get_beta_given_names | Source code |
| get_cutpoints | Source code |
| get_endpoints | Source code |
| get_int | Source code |
| get_int_compete | Source code |
| get_miss_perc | Source code |
| get_newEndpoints | Source code |
| get_refs_risk | Source code |
| handle_missing_data | Source code |
| iCARE | Man page |
| make_design_matrix_covs | Source code |
| make_design_matrix_dist | Source code |
| make_triple_check | Source code |
| mort_inc | Man page |
| new_cov_prof | Man page |
| new_snp_prof | Man page |
| output | Man page |
| package_results | Source code |
| pick_lambda | Source code |
| plot | Man page |
| plot.icare | Source code |
| plot.icareSplit | Source code |
| plot.icareValid | Source code |
| plotModelValidation | Man page Source code |
| precise_lambda0 | Source code |
| print.icare | Source code |
| print.icareSplit | Source code |
| print.icareValid | Source code |
| process_SNP_info | Source code |
| process_triple_check | Source code |
| ref_cov_dat | Man page |
| ref_cov_dat_post_50 | Man page |
| return_and_print | Source code |
| round_down | Source code |
| sim_snps | Source code |
| summary.icare | Source code |
| summary.icareSplit | Source code |
| survival_givenX | Source code |
| validation.cohort.data | Man page |
| validation.nested.case.control.data | Man page |
