utils-de: Acceptable fields for DE panels

In iSEEu: iSEE Universe

Description

Set or get the acceptable fields to use for all Panel instances related to differential expression, including VolcanoPlot and MAPlot. These functions are now deprecated.

Usage

.getAcceptablePValueFields()

.getAcceptableLogFCFields()

.getAcceptableAveAbFields()

.setAcceptablePValueFields(value)

.setAcceptableLogFCFields(value)

.setAcceptableAveAbFields(value)

Arguments

value

Character vector of acceptable fields (usually in the rowData) for a given statistic.

Value

.getAcceptablePValueFields will return a character vector of acceptable names for p-value fields.

.getAcceptableLogFCFields will return a character vector of acceptable names for log-FC fields.

.getAcceptableAveAbFields will return a character vector of acceptable names for average abundance fields.

The setter functions will define the set of acceptable fields and return NULL invisibly.

Author(s)

Aaron Lun

Examples

old <- .getAcceptablePValueFields()
old

.setAcceptablePValueFields("YAY")
.getAcceptablePValueFields()

# Restoring.
.setAcceptablePValueFields(old)

iSEEu documentation built on Nov. 8, 2020, 8:12 p.m.