iSeq: Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
Version 1.28.0

This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.

Browse man pages Browse package API and functions Browse package files

AuthorQianxing Mo
Bioconductor views ChIPSeq Sequencing
Date of publicationNone
MaintainerQianxing Mo <qmo@bcm.edu>
LicenseGPL (>= 2)
Version1.28.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("iSeq")

Man pages

iSeq1: Bayesian modeling of ChIP-seq data through hidden Ising...
iSeq2: Bayesian hierarchical modeling of ChIP-seq data through...
mergetag: Aggregate sequence tags into dynamic genomic windows/bins and...
nrsf: nrsf data
peakreg: Call and merge enriched genomic windows/bins.
plotreg: A function used to plot enriched genomic regions

Functions

dirFDR Source code
iSeq1 Man page Source code
iSeq2 Man page Source code
mergetag Man page Source code
nrsf Man page
peakreg Man page Source code
plotreg Man page Source code
subcon Source code

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/iSeq.R
build
build/vignette.rds
data
data/nrsf.RData
demo
demo/00Index
demo/iSeqdemo.R
inst
inst/doc
inst/doc/iSeq.R
inst/doc/iSeq.Rnw
inst/doc/iSeq.pdf
man
man/iSeq1.Rd
man/iSeq2.Rd
man/mergetag.Rd
man/nrsf.Rd
man/peakreg.Rd
man/plotreg.Rd
src
src/iSeq.c
vignettes
vignettes/iSeq.Rnw
iSeq documentation built on May 20, 2017, 9:44 p.m.