This package uses Bayesian hidden Ising models to identify IP-enriched genomic regions from ChIP-seq data. It can be used to analyze ChIP-seq data with and without controls and replicates.
|Date of publication||None|
|Maintainer||Qianxing Mo <email@example.com>|
|License||GPL (>= 2)|
iSeq1: Bayesian modeling of ChIP-seq data through hidden Ising...
iSeq2: Bayesian hierarchical modeling of ChIP-seq data through...
mergetag: Aggregate sequence tags into dynamic genomic windows/bins and...
nrsf: nrsf data
peakreg: Call and merge enriched genomic windows/bins.
plotreg: A function used to plot enriched genomic regions