read_gmt: Read in a GMT file
In ideal: Interactive Differential Expression AnaLysis

Description Usage Arguments Value Examples

Returns a list of pathways from a GMT file.

1	read_gmt(gmtfile)

gmtfile

A character value, containing the location of the GMT formatted file. It can also be a file found online

A list of vectors, one for each pathway in the GMT file.

# this example reads in the freely available pathways from wikipathways
mysigs <- read_gmt(
  "http://data.wikipathways.org/20180910/gmt/wikipathways-20180910-gmt-Homo_sapiens.gmt")
head(mysigs)
# see how the gene identifiers are encoded as ENTREZ id