getReference-IpdDb-method: Get reference sequences
In ipdDb: IPD IMGT/HLA and IPD KIR database for Homo sapiens
Description
Usage
Arguments
Value
Examples
Description
Get the reference sequences for alleles.
Usage
1
getReference(x, allele)
Arguments
x
The database connection; an IpdDb object.
allele
The alleles of interest as a character vector.
Value
A Biostrings:DNAStringSet
object with all references.
Examples
1
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## Load the database
hla <- loadHlaData()
## Get the loci
loci <- getLoci(hla)
## Get alleles of a locus
alleles <- getAlleles(hla, loci[1])
allelesOfInterest <- alleles[1:10]
## Get the sequences
seqs <- getReference(hla, allelesOfInterest)
ipdDb documentation built on Nov. 8, 2020, 6:07 p.m.
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Description Usage Arguments Value Examples
Description
Get the reference sequences for alleles.
Usage
1 | getReference(x, allele)
|
Arguments
x |
The database connection; an |
allele |
The alleles of interest as a character vector. |
Value
A Biostrings:DNAStringSet
object with all references.
Examples
1 2 3 4 5 6 7 8 9 | ## Load the database
hla <- loadHlaData()
## Get the loci
loci <- getLoci(hla)
## Get alleles of a locus
alleles <- getAlleles(hla, loci[1])
allelesOfInterest <- alleles[1:10]
## Get the sequences
seqs <- getReference(hla, allelesOfInterest)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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