jmosaics: Joint analysis of multiple ChIP-Seq data sets
Version 1.11.0

jmosaics detects enriched regions of ChIP-seq data sets jointly.

Browse man pages Browse package API and functions Browse package files

AuthorXin Zeng
Date of publicationNone
MaintainerXin Zeng <xinzeng@stat.wisc.edu>
LicenseGPL (>= 2)
Version1.11.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("jmosaics")

Man pages

jmosaics-package: Joint analysis of multiple ChIP-seq data sets
jmosaicsPattern: Call peaks and obtain combinatorial enrichment patterns
origin_bin: ChIP-seq data of Histone H3K4me1 and H3K27me3.
readBinsMultiple: Match coordinates for multiple data sets

Functions

jmosaics Man page
jmosaics-package Man page
jmosaicsPattern Man page
origin_bin Man page
readBinsMultiple Man page

Files

jmosaics/DESCRIPTION
jmosaics/NAMESPACE
jmosaics/R
jmosaics/R/base_B_region_call.R
jmosaics/R/base_EM.R
jmosaics/R/base_E_region_call.R
jmosaics/R/jmosaicsPattern.R
jmosaics/R/readBinsMultiple.R
jmosaics/build
jmosaics/build/vignette.rds
jmosaics/data
jmosaics/data/datalist
jmosaics/data/jmosaics_example_data.rda
jmosaics/inst
jmosaics/inst/doc
jmosaics/inst/doc/jmosaics.R
jmosaics/inst/doc/jmosaics.Rnw
jmosaics/inst/doc/jmosaics.pdf
jmosaics/inst/extdata
jmosaics/inst/extdata/h3k27me3_chip_chr10.txt
jmosaics/inst/extdata/h3k27me3_input_chr10.txt
jmosaics/inst/extdata/h3k4me1_chip_chr10.txt
jmosaics/inst/extdata/h3k4me1_input_chr10.txt
jmosaics/man
jmosaics/man/jmosaics-package.Rd
jmosaics/man/jmosaicsPattern.Rd
jmosaics/man/jmosaics_example_data.rd
jmosaics/man/origin_bin.Rd
jmosaics/man/readBinsMultiple.Rd
jmosaics/vignettes
jmosaics/vignettes/chipseq_BIG.bib
jmosaics/vignettes/jmosaics-h3k27me3_g1e-plot.pdf
jmosaics/vignettes/jmosaics-h3k4me1_g1e-plot.pdf
jmosaics/vignettes/jmosaics.Rnw
jmosaics documentation built on Oct. 5, 2016, 4:45 a.m.