jmosaics: Joint analysis of multiple ChIP-Seq data sets

jmosaics detects enriched regions of ChIP-seq data sets jointly.

Author
Xin Zeng
Date of publication
None
Maintainer
Xin Zeng <xinzeng@stat.wisc.edu>
License
GPL (>= 2)
Version
1.11.0

View on Bioconductor

Man pages

jmosaics-package
Joint analysis of multiple ChIP-seq data sets
jmosaicsPattern
Call peaks and obtain combinatorial enrichment patterns
origin_bin
ChIP-seq data of Histone H3K4me1 and H3K27me3.
readBinsMultiple
Match coordinates for multiple data sets

Files in this package

jmosaics/DESCRIPTION
jmosaics/NAMESPACE
jmosaics/R
jmosaics/R/base_B_region_call.R
jmosaics/R/base_EM.R
jmosaics/R/base_E_region_call.R
jmosaics/R/jmosaicsPattern.R
jmosaics/R/readBinsMultiple.R
jmosaics/build
jmosaics/build/vignette.rds
jmosaics/data
jmosaics/data/datalist
jmosaics/data/jmosaics_example_data.rda
jmosaics/inst
jmosaics/inst/doc
jmosaics/inst/doc/jmosaics.R
jmosaics/inst/doc/jmosaics.Rnw
jmosaics/inst/doc/jmosaics.pdf
jmosaics/inst/extdata
jmosaics/inst/extdata/h3k27me3_chip_chr10.txt
jmosaics/inst/extdata/h3k27me3_input_chr10.txt
jmosaics/inst/extdata/h3k4me1_chip_chr10.txt
jmosaics/inst/extdata/h3k4me1_input_chr10.txt
jmosaics/man
jmosaics/man/jmosaics-package.Rd
jmosaics/man/jmosaicsPattern.Rd
jmosaics/man/jmosaics_example_data.rd
jmosaics/man/origin_bin.Rd
jmosaics/man/readBinsMultiple.Rd
jmosaics/vignettes
jmosaics/vignettes/chipseq_BIG.bib
jmosaics/vignettes/jmosaics-h3k27me3_g1e-plot.pdf
jmosaics/vignettes/jmosaics-h3k4me1_g1e-plot.pdf
jmosaics/vignettes/jmosaics.Rnw