Man pages for loci2path
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
| biocarta | eQTL geneset enrichment query demo data |
| check.geneid | check compatibility of gene identifiers between eQTL set and... |
| eqtlSet-class | eqtlSet Class |
| eset.list | eQTL geneset enrichment query demo data |
| geneSet-class | geneSet Class |
| getHeatmap-methods | Generate heatmap of enrichment matrix from query result |
| getMat-methods | Extract tissue/geneset enrichment matrix from query result |
| getPathDescription-methods | Extract description for enriched pathways from query result... |
| getPval-methods | Extract tissue/geneset enrichment p-value distribution from... |
| getTissueDegree-methods | Extract tissue degree from query result |
| getWordcloud-methods | Plot word cloud using frequent terms of pathways and genes |
| loci2pathResult-class | loci2pathResult Class |
| query.gr | eQTL geneset enrichment query demo data |
| query-methods | Query enrichment in geneset through multiple eQTL sets. |
