mCSEA-package: Methylated CpGs Set Enrichment Analysis

In mCSEA: Methylated CpGs Set Enrichment Analysis

Description

Identification of diferentially methylated regions (DMRs) in predefined regions (promoters, CpG islands...) from the human genome using Illumina's 450K or EPIC microarray data. Provides methods to rank CpG probes based on linear models and includes plotting functions.

Author(s)

Jordi Martorell Marug<c3><a1>n

Maintainer: Jordi Martorell Marug<c3><a1>n<[e-mail]>

Examples

## Not run: 
library(mCSEA)
data(mcseadata)
myRank <- rankProbes(betaTest, phenoTest, refGroup = "Control")
myResults <- mCSEATest(myRank, regionsTypes = "promoters", platform = "EPIC")

## End(Not run)
data(precomputedmCSEA)
head(myResults$promoters)

mCSEA documentation built on Nov. 8, 2020, 5:37 p.m.