maskBAD: Masking probes with binding affinity differences
Version 1.20.0

Package includes functions to analyze and mask microarray expression data.

Browse man pages Browse package API and functions Browse package files

AuthorMichael Dannemann <michael_dannemann@eva.mpg.de>
Bioconductor views Microarray
Date of publicationNone
MaintainerMichael Dannemann <michael_dannemann@eva.mpg.de>
LicenseGPL version 2 or newer
Version1.20.0
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("maskBAD")

Man pages

exmask: Output object of the function mask
mask: Filtering/Masking expression data
newAffyBatch: AffyBatch with reduced genes
newCdf: Object of type environment
overlapExprExtMasks: Error Analysis of Masking Results
plotProbe: Plot probes
prepareMaskedAffybatch: Creating a new CDF
sequenceMask: Object containing sequence information for probes.

Functions

exmask Man page
mask Man page Source code
newAffyBatch Man page
newCdf Man page
overlapExprExtMasks Man page Source code
plotProbe Man page Source code
prepareMaskedAffybatch Man page Source code
sequenceMask Man page

Files

COPYING
DESCRIPTION
NAMESPACE
R
R/methods.R
build
build/vignette.rds
data
data/AffyBatch.rda
data/exmask.rda
inst
inst/CITATION
inst/doc
inst/doc/maskBAD.R
inst/doc/maskBAD.Rnw
inst/doc/maskBAD.pdf
man
man/exmask.Rd
man/mask.Rd
man/newAffyBatch.Rd
man/newCdf.Rd
man/overlapExprExtMasks.Rd
man/plotProbe.Rd
man/prepareMaskedAffybatch.Rd
man/sequenceMask.Rd
vignettes
vignettes/maskBAD.Rnw
vignettes/maskBAD.bib
maskBAD documentation built on May 20, 2017, 9:37 p.m.