matchBox: Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

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The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Author
Luigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
Date of publication
None
Maintainer
Luigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
License
Artistic-2.0
Version
1.16.0

View on Bioconductor

Man pages

calcHypPI
Probability intervals calculation for CAT curves using the...
computeCat
Computing overlap proportions among ordered vectors
filterRedundant
This functions removes redundant features from a data.frame
matchBoxExpression
Example data: ranking from three differential gene expression...
matchBox-package
A package to produce Correspondence-At-Top plots (CAT-plots)...
mergeData
Merging data.frames based on common identifiers
plotCat
Plotting correspondence at the top curves

Files in this package

matchBox/DESCRIPTION
matchBox/NAMESPACE
matchBox/R
matchBox/R/catPlotFunctions.R
matchBox/R/utils.R
matchBox/build
matchBox/build/vignette.rds
matchBox/data
matchBox/data/matchBoxExpression.rda
matchBox/inst
matchBox/inst/CITATION
matchBox/inst/doc
matchBox/inst/doc/matchBox.R
matchBox/inst/doc/matchBox.Rnw
matchBox/inst/doc/matchBox.pdf
matchBox/man
matchBox/man/calcHypPI.Rd
matchBox/man/computeCat.Rd
matchBox/man/filterRedundant.Rd
matchBox/man/matchBox-package.Rd
matchBox/man/matchBoxExpression.Rd
matchBox/man/mergeData.Rd
matchBox/man/plotCat.Rd
matchBox/vignettes
matchBox/vignettes/matchBox.Rnw
matchBox/vignettes/matchBox.bib