matchBox: Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("matchBox")
AuthorLuigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
Bioconductor views Annotation Microarray MultipleComparison Software Visualization
Date of publicationNone
MaintainerLuigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
LicenseArtistic-2.0
Version1.18.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/catPlotFunctions.R R/utils.R
build
build/vignette.rds
data
data/matchBoxExpression.rda
inst
inst/CITATION
inst/doc
inst/doc/matchBox.R
inst/doc/matchBox.Rnw
inst/doc/matchBox.pdf
man
man/calcHypPI.Rd man/computeCat.Rd man/filterRedundant.Rd man/matchBox-package.Rd man/matchBoxExpression.Rd man/mergeData.Rd man/plotCat.Rd
vignettes
vignettes/matchBox.Rnw
vignettes/matchBox.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.