matchBox: Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

AuthorLuigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
Date of publicationNone
MaintainerLuigi Marchionni <marchion@jhu.edu>, Anuj Gupta <agupta52@jhu.edu>
LicenseArtistic-2.0
Version1.16.0

View on Bioconductor

Files

matchBox/DESCRIPTION
matchBox/NAMESPACE
matchBox/R
matchBox/R/catPlotFunctions.R matchBox/R/utils.R
matchBox/build
matchBox/build/vignette.rds
matchBox/data
matchBox/data/matchBoxExpression.rda
matchBox/inst
matchBox/inst/CITATION
matchBox/inst/doc
matchBox/inst/doc/matchBox.R
matchBox/inst/doc/matchBox.Rnw
matchBox/inst/doc/matchBox.pdf
matchBox/man
matchBox/man/calcHypPI.Rd matchBox/man/computeCat.Rd matchBox/man/filterRedundant.Rd matchBox/man/matchBox-package.Rd matchBox/man/matchBoxExpression.Rd matchBox/man/mergeData.Rd matchBox/man/plotCat.Rd
matchBox/vignettes
matchBox/vignettes/matchBox.Rnw
matchBox/vignettes/matchBox.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.