mdqc: Mahalanobis Distance Quality Control for microarrays

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MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Author
Justin Harrington
Date of publication
None
Maintainer
Gabriela Cohen-Freue <gcohen@mrl.ubc.ca>
License
LGPL (>= 2)
Version
1.36.0

View on Bioconductor

Man pages

allQC
QC report for MLL.B
mdqc
MDQC: Mahalanobis Distance Quality Control
mdqc-package
MDQC: Mahalanobis Distance Quality Control
plot.mdqc
The plot method for a MDQC object
prcomp.robust
Principal Components Analysis using Robust Estimators

Files in this package

mdqc/DESCRIPTION
mdqc/NAMESPACE
mdqc/R
mdqc/R/mdqc.R
mdqc/R/sestimator.R
mdqc/build
mdqc/build/vignette.rds
mdqc/data
mdqc/data/allQC.rda
mdqc/inst
mdqc/inst/doc
mdqc/inst/doc/mdqcvignette.R
mdqc/inst/doc/mdqcvignette.Rnw
mdqc/inst/doc/mdqcvignette.pdf
mdqc/man
mdqc/man/allQC.Rd
mdqc/man/mdqc-package.Rd
mdqc/man/mdqc.Rd
mdqc/man/plot.mdqc.Rd
mdqc/man/prcomp.robust.Rd
mdqc/vignettes
mdqc/vignettes/mdqcvignette.Rnw