mdqc: Mahalanobis Distance Quality Control for microarrays

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("mdqc")
AuthorJustin Harrington
Bioconductor views Microarray QualityControl
Date of publicationNone
MaintainerGabriela Cohen-Freue <gcohen@mrl.ubc.ca>
LicenseLGPL (>= 2)
Version1.38.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
R
R/mdqc.R R/sestimator.R
build
build/vignette.rds
data
data/allQC.rda
inst
inst/doc
inst/doc/mdqcvignette.R
inst/doc/mdqcvignette.Rnw
inst/doc/mdqcvignette.pdf
man
man/allQC.Rd man/mdqc-package.Rd man/mdqc.Rd man/plot.mdqc.Rd man/prcomp.robust.Rd
vignettes
vignettes/mdqcvignette.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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