Files in megadepth

megadepth: BigWig and BAM related utilities

README.Rmd NEWS.md README.md

NAMESPACE

DESCRIPTION

INSTALL

R/bam_to_junctions.R R/prefix_utils.R R/megadepth.R R/read_junction.R R/install.R R/get_coverage.R R/read_coverage.R R/bam_to_bigwig.R R/utils.R

inst/CITATION

inst/doc/megadepth.R inst/doc/megadepth.Rmd

inst/doc/megadepth.html

inst/tests/test.bam

inst/tests/test.bam.all.bw

inst/tests/test3.bam

inst/tests/long_reads.bam

inst/tests/test2.bam

inst/tests/test_exons.bed

inst/tests/test.bam.bai

inst/tests/testbw2.bed

inst/tests/test_output_files/test.bam.all.bw

inst/tests/test_output_files/test.bam.unique.tsv

inst/tests/test_output_files/test.bam.unique.bw

inst/tests/test_output_files/test.bam.annotation.tsv

inst/tests/test_output_files/test.bam.softclip.tsv

inst/tests/test_output_files/test.bam.alts.tsv

inst/tests/test_output_files/test.bam.ends.tsv

inst/tests/test_output_files/test.bam.frags.tsv

inst/tests/test_output_files/test.bam.starts.tsv

build/vignette.rds

tests/testthat.R tests/testthat/test-bam_to_bigwig.R tests/testthat/test-read_junction.R tests/testthat/test-megadepth_main_tests.R tests/testthat/test-install_megadepth.R tests/testthat/test-get_coverage.R tests/testthat/test-bam_to_junctions.R vignettes/megadepth.Rmd man/install_megadepth.Rd man/megadepth_cmd.Rd man/read_junction_table.Rd man/read_coverage.Rd man/bam_to_bigwig.Rd man/bam_to_junctions.Rd man/get_coverage.Rd

megadepth documentation built on Feb. 5, 2021, 2:03 a.m.