qcplot: Methods for dealing with control data for Illumina...
In methylumi: Handle Illumina methylation data

The qcplot function simply generates a plot of the control probe information for a given controlType.

1 2	qcplot(object,controltype,...) controlTypes(object,...)

`object`	An object of class `MethyLumiSet` or `MethyLumiQC`
`controltype`	A single character value representing the bead type to plot from the quality control data. The available types are accessible via the `controlTypes` method.
`...`	passed to plot function

The descriptions of the various control types can be obtained from the Illumina methylation user's guides.

Sean Davis <sdavis2@mail.nih.gov>

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data(mldat)
controlTypes(mldat)
qcplot(mldat,controlTypes(mldat)[3])

methylumi documentation built on Nov. 8, 2020, 6:26 p.m.

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