Man pages for microbiomeDASim
Microbiome Differential Abundance Simulation
| final_output_gen | Generating the final combined bug output |
| form_beta_check | Beta Specification Check |
| gen_microbiome_norm_feature_check | Checking that features are specified appopriately |
| gen_norm_microbiome | Generate Longitduinal Differential Abundance from... |
| gen_norm_microbiome_obs | Generate Longitduinal Differential Abundance from... |
| ggplot_spaghetti | Spaghetti Plots using 'ggplot2' |
| IP_form_check | Inflection point check for 'mean_trend' |
| mean_trend | Function for Generating Various Longitudinal Mean Trends |
| mean_trend_beta_vec | Create beta vector for 'mean_trend' for all functional forms |
| mean_trend_design_mat | Create Design Matrix for 'mean_trend' function |
| mvrnorm_corr_gen | Generate Multivariate Random Normal Longitudinal Data |
| mvrnorm_sim | Simulate Microbiome Longitudinal Data from Multivariate... |
| mvrnorm_sim_obs | Simulate Microbiome Longitudinal Data from Multivariate... |
| sigma_corr_function | Generating the longitudinal correlation matrix for repeated... |
| simulate2MRexperiment | Convert simulated output to MRexperiment object |
| simulate2phyloseq | Convert simulated output to phyloseq object |
| timepoint_process | Function for processing and checking the inputed timepoints |
| trunc_bugs | Function for inducing truncation of outcome |
