mimager: mimager: The Microarray Imager

In mimager: mimager: The Microarray Imager

Description

mimager simplifies the creation of microarray images (sometimes called "pseudo-images") for the purpose of identifying problematic regional aberrations. Notable features include support for many of Bioconductor's core microarray data structures, providng compatibility with a variety of common microarray platforms, and the ability to visualize multiple microarrays simultaneously.

Details

The following Bioconductor microarray data structures are currently supported:

• AffyBatch-class for Affymetrix GeneChip probe level data

• PLMset-class for probe-level linear models fitted to Affymetrix GeneChip probe level data

• FeatureSet-class for storing Expression/Exon/SNP data from a variety of oligonucleotide platforms

• oligoPLM-class for probe-level linear models fitted to any of the FeatureSet-like classes

mimager documentation built on Nov. 8, 2020, 5:36 p.m.