API for mixOmics
Omics Data Integration Project
| Global functions | |
|---|---|
| .add_average_blocks | Source code |
| .add_sdev_loadings_and_variates | Source code |
| .are.colors | Source code |
| .biplot | Source code |
| .change_if_null | Source code |
| .check.cutoff | Source code |
| .check_alpha | Source code |
| .check_character | Source code |
| .check_comp | Source code |
| .check_cpus | Source code |
| .check_cv_args | Source code |
| .check_logical | Source code |
| .check_ncomp | Source code |
| .check_numeric_matrix | Source code |
| .check_test.keepX | Source code |
| .check_zero_var_columns | Source code |
| .colour.txt | Source code |
| .create_design | Source code |
| .eval_non.orthogonality | Source code |
| .get.character.vector | Source code |
| .get.colors | Source code |
| .get.cols.and.group | Source code |
| .get.group | Source code |
| .get.ind.colors | Source code |
| .get.pch | Source code |
| .get_var_stats | Source code |
| .impute.nipals | Source code |
| .message | Source code |
| .mixo_rng | Source code |
| .name_list | Source code |
| .onAttach | Source code |
| .onUnix | Source code |
| .perf.mixo_pls_cv | Source code |
| .plotLoadings_barplot | Source code |
| .reconstitute.matrix | Source code |
| .relist | Source code |
| .stop | Source code |
| .unexpected_err | Source code |
| .unlist_repeat_cv_output | Source code |
| .warning | Source code |
| BinarySearch | Source code |
| Check.entry.pls | Source code |
| Check.entry.rgcca | Source code |
| Check.entry.sgcca | Source code |
| Check.entry.single | Source code |
| Check.entry.wrapper.mint.block | Source code |
| Koren.16S | Man page |
| LOGOCV | Source code |
| MCVfold.block.splsda | Source code |
| MCVfold.spls | Source code |
| Mfold | Source code |
| add.alpha | Source code |
| auc_roc | Source code |
| auroc | Man page Source code |
| auroc.mint.block.plsda | Man page Source code |
| auroc.mint.block.splsda | Man page |
| auroc.mint.plsda | Man page Source code |
| auroc.mint.splsda | Man page |
| auroc.mixo_plsda | Man page Source code |
| auroc.mixo_splsda | Man page |
| auroc.sgccda | Man page Source code |
| background.predict | Man page Source code |
| bez | Source code |
| bezierCurve | Source code |
| bin.color | Source code |
| biplot | Man page |
| biplot.mixo_pls | Man page |
| biplot.pca | Man page |
| block.pls | Man page Source code |
| block.plsda | Man page Source code |
| block.spls | Man page Source code |
| block.splsda | Man page Source code |
| breast.TCGA | Man page |
| breast.tumors | Man page |
| check.input.plotIndiv | Source code |
| check.input.plotLoadings | Source code |
| cim | Man page Source code |
| cimDiablo | Man page Source code |
| circosPlot | Man page Source code |
| clr.backtransfo | Source code |
| clr.transfo | Source code |
| color.GreenRed | Man page |
| color.jet | Man page |
| color.mixo | Man page Source code |
| color.spectral | Man page |
| colors | Man page |
| coords | Source code |
| coords.roc | Source code |
| defl.select | Source code |
| deflation | Source code |
| diverse.16S | Man page |
| do.scale | Source code |
| draw.link | Source code |
| draw.link.pg | Source code |
| draw.link2 | Source code |
| draw.point.w | Source code |
| draw.text.rt | Source code |
| draw.text.w | Source code |
| drawIdeogram | Source code |
| drawLinePlot | Source code |
| drawLinks | Source code |
| estim.regul | Man page |
| explained_variance | Man page Source code |
| genLinks | Source code |
| get.BER | Man page Source code |
| get.confusion_matrix | Man page Source code |
| get.contrib.df | Source code |
| get.keepA | Source code |
| get.loadings.ndisplay | Source code |
| get.name.and.value | Source code |
| get.weights | Source code |
| ilr.transfo | Source code |
| image.estim.regul | Man page |
| image.tune.rcc | Man page Source code |
| imgCor | Man page Source code |
| impute.nipals | Man page Source code |
| initialisation_by_svd | Source code |
| internal_getVariatesAndLabels | Source code |
| internal_graphicModule | Source code |
| internal_predict.DA | Source code |
| internal_wrapper.mint | Source code |
| internal_wrapper.mint.block | Source code |
| ipca | Man page |
| l2.norm | Source code |
| layout.plotLoadings | Source code |
| linnerud | Man page |
| liver.toxicity | Man page |
| logratio-transformations | Man page |
| logratio.transfo | Man page Source code |
| map | Man page |
| mat.rank | Man page |
| mean_centering_per_study | Source code |
| mint.block.pls | Man page Source code |
| mint.block.plsda | Man page Source code |
| mint.block.spls | Man page Source code |
| mint.block.splsda | Man page Source code |
| mint.pca | Man page Source code |
| mint.pls | Man page Source code |
| mint.plsda | Man page Source code |
| mint.spls | Man page Source code |
| mint.splsda | Man page Source code |
| mixOmics | Man page Source code |
| mixOmics-package | Man page |
| mixo_gg.theme | Source code |
| multidrug | Man page |
| nearZeroVar | Man page |
| network | Man page Source code |
| network.default | Man page |
| network.pls | Man page |
| network.rcc | Man page |
| network.spls | Man page |
| nipals | Man page |
| norm2 | Source code |
| nutrimouse | Man page |
| panel.ellipses | Source code |
| pca | Man page Source code |
| pcasvd | Source code |
| pcatune | Man page |
| perf | Man page Source code |
| perf.mint.pls | Man page Source code |
| perf.mint.plsda | Man page |
| perf.mint.spls | Man page |
| perf.mint.splsda | Man page |
| perf.mixo_pls | Man page Source code |
| perf.mixo_plsda | Man page Source code |
| perf.mixo_spls | Man page |
| perf.mixo_splsda | Man page |
| perf.sgccda | Man page |
| plot.pca | Man page Source code |
| plot.perf | Man page |
| plot.perf.mint.plsda.mthd | Man page |
| plot.perf.mint.splsda.mthd | Man page |
| plot.perf.pls | Man page |
| plot.perf.pls.mthd | Man page |
| plot.perf.plsda.mthd | Man page |
| plot.perf.sgccda.mthd | Man page |
| plot.perf.spls.mthd | Man page |
| plot.perf.splsda.mthd | Man page |
| plot.rcc | Man page Source code |
| plot.sgccda | Man page Source code |
| plot.tune | Man page |
| plot.tune.block.splsda | Man page Source code |
| plot.tune.rcc | Man page |
| plot.tune.spca | Man page Source code |
| plot.tune.spls | Man page Source code |
| plot.tune.spls1 | Man page Source code |
| plot.tune.splsda | Man page Source code |
| plotArrow | Man page Source code |
| plotDiablo | Man page Source code |
| plotIndiv | Man page Source code |
| plotIndiv.mint.pls | Man page Source code |
| plotIndiv.mint.plsda | Man page |
| plotIndiv.mint.spls | Man page |
| plotIndiv.mint.splsda | Man page |
| plotIndiv.mixo_pls | Man page Source code |
| plotIndiv.pca | Man page Source code |
| plotIndiv.rgcca | Man page |
| plotIndiv.sgcca | Man page Source code |
| plotLoadings | Man page Source code |
| plotLoadings.mint.pls | Man page Source code |
| plotLoadings.mint.plsda | Man page Source code |
| plotLoadings.mint.spls | Man page |
| plotLoadings.mint.splsda | Man page |
| plotLoadings.mixo_pls | Man page Source code |
| plotLoadings.mixo_plsda | Man page Source code |
| plotLoadings.mixo_spls | Man page |
| plotLoadings.mixo_splsda | Man page |
| plotLoadings.pca | Man page Source code |
| plotLoadings.pls | Man page |
| plotLoadings.rcc | Man page |
| plotLoadings.rgcca | Man page |
| plotLoadings.sgcca | Man page |
| plotLoadings.sgccda | Man page |
| plotLoadings.spls | Man page |
| plotVar | Man page Source code |
| plotVar.pca | Man page |
| plotVar.pls | Man page |
| plotVar.plsda | Man page |
| plotVar.rcc | Man page |
| plotVar.rgcca | Man page |
| plotVar.sgcca | Man page |
| plotVar.spca | Man page |
| plotVar.spls | Man page |
| plotVar.splsda | Man page |
| pls | Man page Source code |
| plsda | Man page Source code |
| predict | Man page |
| predict.block.pls | Man page |
| predict.block.spls | Man page |
| predict.mint.block.pls | Man page |
| predict.mint.block.plsda | Man page |
| predict.mint.block.spls | Man page |
| predict.mint.block.splsda | Man page |
| predict.mint.pls | Man page |
| predict.mint.plsda | Man page |
| predict.mint.spls | Man page |
| predict.mint.splsda | Man page |
| predict.mixo_pls | Man page Source code |
| predict.mixo_spls | Man page |
| predict.pls | Man page |
| predict.plsda | Man page |
| predict.spls | Man page |
| predict.splsda | Man page |
| Man page | |
| print.ipca | Man page Source code |
| print.mint.pls | Man page Source code |
| print.mint.plsda | Man page Source code |
| print.mint.spls | Man page Source code |
| print.mint.splsda | Man page Source code |
| print.mixo_pls | Man page Source code |
| print.mixo_plsda | Man page Source code |
| print.mixo_spls | Man page Source code |
| print.mixo_splsda | Man page Source code |
| print.pca | Man page Source code |
| print.perf.mint.splsda.mthd | Man page Source code |
| print.perf.pls.mthd | Man page Source code |
| print.perf.plsda.mthd | Man page Source code |
| print.perf.sgccda.mthd | Man page Source code |
| print.perf.splsda.mthd | Man page Source code |
| print.predict | Man page Source code |
| print.rcc | Man page Source code |
| print.rgcca | Man page Source code |
| print.sgcca | Man page Source code |
| print.sgccda | Man page Source code |
| print.sipca | Man page Source code |
| print.spca | Man page |
| print.summary | Man page Source code |
| print.tune.block.splsda | Man page Source code |
| print.tune.mint.splsda | Man page Source code |
| print.tune.pca | Man page Source code |
| print.tune.pls | Man page Source code |
| print.tune.rcc | Man page Source code |
| print.tune.spca | Man page Source code |
| print.tune.spls1 | Man page Source code |
| print.tune.splsda | Man page Source code |
| rcc | Man page Source code |
| rcc.default | Man page |
| roc.default | Source code |
| roc.utils.match.coords.ret.args | Source code |
| roc.utils.max.partial.auc | Source code |
| roc.utils.max.partial.auc.auc | Source code |
| roc.utils.max.thresholds.idx | Source code |
| roc.utils.min.partial.auc | Source code |
| roc.utils.min.partial.auc.auc | Source code |
| roc.utils.perfs | Source code |
| roc.utils.perfs.fast.all.threshold | Source code |
| scale.function | Source code |
| scale.function_old | Source code |
| scale.v | Source code |
| select.var | Man page |
| selectVar | Man page Source code |
| selectVar.mixo_pls | Man page Source code |
| selectVar.mixo_spls | Man page |
| selectVar.pca | Man page |
| selectVar.rgcca | Man page |
| selectVar.sgcca | Man page |
| shape.input.plotIndiv | Source code |
| sipca | Man page |
| soft | Source code |
| soft_thresholding_L1 | Source code |
| sort.roc | Source code |
| sparsity | Source code |
| spca | Man page Source code |
| splotMatPlot | Source code |
| spls | Man page Source code |
| splsda | Man page Source code |
| srbct | Man page |
| statauc | Source code |
| stemcells | Man page |
| stop.message | Source code |
| stratified.subsampling | Source code |
| study_split | Man page Source code |
| summary | Man page |
| summary.mixo_pls | Man page Source code |
| summary.mixo_spls | Man page |
| summary.pca | Man page |
| summary.rcc | Man page Source code |
| t.test.process | Source code |
| tune | Man page |
| tune.block.splsda | Man page |
| tune.mint.splsda | Man page |
| tune.pca | Man page Source code |
| tune.rcc | Man page Source code |
| tune.spca | Man page Source code |
| tune.spls | Man page Source code |
| tune.splsda | Man page |
| tune.splslevel | Man page |
| unmap | Man page |
| vac18 | Man page |
| vac18.simulated | Man page |
| vip | Man page Source code |
| withinVariation | Man page Source code |
| wrapper.rgcca | Man page Source code |
| wrapper.sgcca | Man page Source code |
| wrapper.sgccda | Man page |
| yeast | Man page |
