| checkCuts | checkCuts |
| cuts | A GRanges object of differentially methylated MspI cut sites... |
| diffMeth | diffMeth |
| msgbsR | msgbsR |
| plotCircos | plotCircos |
| plotCounts | plotCounts |
| ratdata | Read counts of potential MspI cut sites from a MS-GBS... |
| ratdata2 | Read counts of correct MspI cut sites from a MS-GBS... |
| rawCounts | rawCounts |
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