API for multiHiCcompare
Normalize and detect differences between Hi-C datasets when replicates of each experimental condition are available

Global functions
HCT116_r1 Man page
HCT116_r2 Man page
HCT116_r3 Man page
HCT116_r4 Man page
HCT116_r5 Man page
HCT116_r6 Man page
Hicexp-class Man page
MD.hicexp.chr Source code
MD.smooth Source code
MD_composite Man page Source code
MD_hicexp Man page Source code
check_tables Source code
cloess Source code
count_manhattan Source code
cyclic_loess Man page Source code
et_reformat Source code
fastlo Man page Source code Source code
fastlo_condition Source code
get_dist_tables Source code
glm_reformat Source code
hg19_cyto Man page
hg38_cyto Man page
hic_exactTest Man page Source code
hic_filter Man page Source code
hic_glm Man page Source code
hic_scale Man page Source code
hic_table Man page
hic_table,Hicexp-method Man page
hic_table,character,ANY-method Man page
hicexp2 Man page
hicexp_diff Man page
hictable2DGEList Source code
loess.as Source code
loess_condition Source code
make_hicexp Man page Source code
manhattan_hicexp Man page Source code
meta Man page
meta,Hicexp-method Man page
meta,character,ANY-method Man page
normalized Man page
normalized,Hicexp-method Man page
normalized,character,ANY-method Man page
perm_test Man page Source code
plot_counts Man page Source code
plot_pvals Man page Source code
pval_heatmap Man page Source code
resolution Man page
resolution,Hicexp-method Man page
resolution,character,ANY-method Man page
results Man page
results,Hicexp-method Man page
results,character,ANY-method Man page
scale_chr Source code
show,Hicexp-method Man page
show,character,ANY-method Man page
smartApply Man page Source code
topDirs Man page Source code
multiHiCcompare documentation built on Nov. 1, 2018, 2:59 a.m.