Description Usage Arguments Details Value Note Author(s) References See Also Examples
MUSCLE performs multiple sequence alignments of nucleotide or amino acid sequences.
1 |
stringset |
An object of class |
quiet |
Logical, whether to prevent printing of the progress of the algorithm to the screen. Defaults to FALSE. |
... |
Arguments (options and flags) for the MUSCLE algorithm (see Details). |
Arguments for the MUSCLE algorithm are either options or flags. Options take a variety of values, but flags are always logicals (TRUE or FALSE). All options and flags are explained in detail on the MUSCLE website: http://www.drive5.com/muscle/muscle_userguide3.8.html
Output is an object of class MultipleAlignment
: DNAMultipleAlignment
, RNAMultipleAlignment
, or AAMultipleAlignment
.
For further details see the MUSCLE website: http://www.drive5.com/muscle/
Algorithm by Robert C. Edgar. Ported into R by Alex T. Kalinka alex.t.kalinka@gmail.com
Edgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32, 1792-1797.
1 2 3 4 5 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.