mapNamedRangesToSets: Map named ranges to corresponding set of named ranges
In netDx: Network-based patient classifier

Description Usage Arguments Details Value Examples

Map named ranges to corresponding set of named ranges

1	mapNamedRangesToSets(gr, rangeList, verbose = FALSE)

`gr`	(GRanges) named ranged to be grouped
`rangeList`	(list) sets of range names
`verbose`	(logical) print detailed messages

Example application is when we have named ranges each corresponding to genes or regulatory elements, and we wish to group these ranges based on metabolic pathway.

RangeList. keys are names of rangeList, values are GRanges

data(genes,pathwayList); 
gene_GR<-GenomicRanges::GRanges(genes$chrom,
  IRanges::IRanges(genes$txStart,genes$txEnd),
		name=genes$name2)
path_GRList <- mapNamedRangesToSets(gene_GR,pathwayList)