Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author | N. Dean <nemad@stat.washington.edu> and A. E. Raftery <raftery@stat.washington.edu> |

Date of publication | None |

Maintainer | N. Dean <nemad@stat.washington.edu> |

License | GPL-2 |

Version | 1.40.0 |

**hiv:** Microarray intensity expression levels for HIV type 1...

**like:** Microarray intensity expression levels for like-like data

**neg.contr:** Indicator of known truly non differentially expressed genes...

**norm1a:** Function for normalizing the mean of single replicate log...

**norm1b:** Function for normalizing the mean and variance (or just the...

**norm1c:** Function for normalizing the mean of...

**norm1d:** Function for normalizing the mean and variance of...

**norm2c:** Function for normalizing the mean of...

**norm2d:** Function for normalizing the mean and variance of...

**nudge1:** Function for normalizing data, fitting a normal-uniform...

**nudge2:** Function for normalizing data, fitting a normal-uniform...

**pos.contr:** Indicator of known truly differentially expressed genes in...

nudge/DESCRIPTION

nudge/NAMESPACE

nudge/R

nudge/R/norm1a.R
nudge/R/norm1b.R
nudge/R/norm1c.R
nudge/R/norm1d.R
nudge/R/norm2c.R
nudge/R/norm2d.R
nudge/R/nudge1.R
nudge/R/nudge2.R
nudge/build

nudge/build/vignette.rds

nudge/data

nudge/data/hiv.RData

nudge/data/like.RData

nudge/inst

nudge/inst/doc

nudge/inst/doc/nudge.vignette.R

nudge/inst/doc/nudge.vignette.Rnw

nudge/inst/doc/nudge.vignette.pdf

nudge/man

nudge/man/hiv.Rd
nudge/man/like.Rd
nudge/man/neg.contr.Rd
nudge/man/norm1a.Rd
nudge/man/norm1b.Rd
nudge/man/norm1c.Rd
nudge/man/norm1d.Rd
nudge/man/norm2c.Rd
nudge/man/norm2d.Rd
nudge/man/nudge1.Rd
nudge/man/nudge2.Rd
nudge/man/pos.contr.Rd
nudge/vignettes

nudge/vignettes/chicago.bst

nudge/vignettes/chicago.sty

nudge/vignettes/nudge.vignette.Rnw

nudge/vignettes/nudge.vignette.bib

nudge/vignettes/nvignplot1.pdf

nudge/vignettes/nvignplot2.pdf

nudge/vignettes/nvignplot3.pdf

nudge/vignettes/nvignplot4.pdf

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.