nudge: Normal Uniform Differential Gene Expression detection

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

AuthorN. Dean <nemad@stat.washington.edu> and A. E. Raftery <raftery@stat.washington.edu>
Date of publicationNone
MaintainerN. Dean <nemad@stat.washington.edu>
LicenseGPL-2
Version1.40.0

View on Bioconductor

Files in this package

nudge/DESCRIPTION
nudge/NAMESPACE
nudge/R
nudge/R/norm1a.R nudge/R/norm1b.R nudge/R/norm1c.R nudge/R/norm1d.R nudge/R/norm2c.R nudge/R/norm2d.R nudge/R/nudge1.R nudge/R/nudge2.R
nudge/build
nudge/build/vignette.rds
nudge/data
nudge/data/hiv.RData
nudge/data/like.RData
nudge/inst
nudge/inst/doc
nudge/inst/doc/nudge.vignette.R
nudge/inst/doc/nudge.vignette.Rnw
nudge/inst/doc/nudge.vignette.pdf
nudge/man
nudge/man/hiv.Rd nudge/man/like.Rd nudge/man/neg.contr.Rd nudge/man/norm1a.Rd nudge/man/norm1b.Rd nudge/man/norm1c.Rd nudge/man/norm1d.Rd nudge/man/norm2c.Rd nudge/man/norm2d.Rd nudge/man/nudge1.Rd nudge/man/nudge2.Rd nudge/man/pos.contr.Rd
nudge/vignettes
nudge/vignettes/chicago.bst
nudge/vignettes/chicago.sty
nudge/vignettes/nudge.vignette.Rnw
nudge/vignettes/nudge.vignette.bib
nudge/vignettes/nvignplot1.pdf
nudge/vignettes/nvignplot2.pdf
nudge/vignettes/nvignplot3.pdf
nudge/vignettes/nvignplot4.pdf

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.