checkOrder: Checks whether a eSet-derived class is ordered by chromosome...

In oligoClasses: Classes for high-throughput arrays supported by oligo and crlmm

Description

Checks whether a eSet-derived class (e.g., a SnpSet or CNSet object) is ordered by chromosome and physical position

Usage

checkOrder(object, verbose = FALSE)
chromosomePositionOrder(object, ...)

Arguments

object	A SnpSet or CopyNumberSet.
verbose	Logical.
...	additional arguments to order

Details

Checks whether the object is ordered by chromosome and physical position.

Value

Logical

Author(s)

R. Scharpf

See Also

order

Examples

data(oligoSetExample)
if(!checkOrder(oligoSet)){
   oligoSet <- chromosomePositionOrder(oligoSet)
}
checkOrder(oligoSet)

oligoClasses documentation built on Nov. 8, 2020, 5:32 p.m.