plotIntegration-methods: Function to draw de result of an integration study

In omicRexposome: Exposome and omic data associatin and integration analysis

Description

This function draws a plots for the ResultSet from integration function

Usage

plotIntegration(object, cmpX = 1, cmpY = 2, lb.th = 0.2,
  legend.show = TRUE, colors, ...)

## S4 method for signature 'ResultSet'
plotIntegration(object, cmpX = 1, cmpY = 2,
  lb.th = 0.2, legend.show = TRUE, colors, ...)

Arguments

object	An object of class ResultSet obtained from crossomics.
cmpX	(default 1) Value of the X-axis when ploting rsults from mcia.
cmpY	(default 2) Value of the Y-axis when ploting rsults from mcia.
lb.th	(default 0.20) Threshold to place labels on radar chart drawn when ploting results from MultiCCA.
legend.show	(default TRUE) If set to FALSE, right legend of radar plot is hidden when ploting results from MultiCCA.
colors	(optional) Names vector with the colors sued to draw each dataset. Used when ploting results from MultiCCA. If missing, random colores are chosen.
...	Optional arguments are given to plot from omicade4 pacage (argument axes is filled with values from cmpX and cmpY).

Value

A ggplot2 object

See Also

plotAssociation for plotting association results. crossomics to create a ResultSet to be passed to this function.

Examples

data("crs", package = "omicRexposome")
plotIntegration(crs)

omicRexposome documentation built on Jan. 24, 2021, 2:03 a.m.