Files in openPrimeRui
Shiny Application for Multiplex PCR Primer Design and Analysis
.travis.yml
README.md
NAMESPACE
DESCRIPTION
build/vignette.rds
R/view_data.R
R/IMGT_data.R
R/navigation.R
R/settings.R
R/startApp.R
R/view_help.R
R/openPrimeRui.R
R/error_handling.R
R/zzz.R
R/frontend_elements.R
R/virus_data.R
R/helper.R
vignettes/openPrimeRui_vignette.Rmd
vignettes/style.css
vignettes/screenshots/overview.png
vignettes/screenshots/navigation_top_right.png
vignettes/screenshots/template_table.png
vignettes/screenshots/IMGT_template_input.png
vignettes/screenshots/settings_choice.png
vignettes/screenshots/settings_tab.png
vignettes/screenshots/template_source_evaluate.png
vignettes/screenshots/view_panel_navigation.png
vignettes/screenshots/primers_tab_evaluation.png
vignettes/screenshots/third_party_tools.png
vignettes/screenshots/download_templates.png
vignettes/screenshots/primers_personal.png
vignettes/screenshots/template_input.png
vignettes/screenshots/coverage_tab.png
vignettes/screenshots/comparison_binding.png
vignettes/screenshots/primers_design.png
vignettes/screenshots/report_comparison.png
vignettes/screenshots/coverage_basic.png
vignettes/screenshots/PCR_conditions.png
vignettes/screenshots/template_allowed_regions.png
vignettes/screenshots/template_input_basic.png
vignettes/screenshots/binding_conditions.png
vignettes/screenshots/action_panel_templates.png
vignettes/screenshots/primers_supplied.png
vignettes/screenshots/primers_iupac.png
vignettes/screenshots/comparison_overview.png
vignettes/screenshots/design_verification.png
vignettes/screenshots/action_panel_sequence.png
vignettes/screenshots/template_file_selector.png
vignettes/screenshots/design_setup.png
vignettes/screenshots/comparison_constraints.png
vignettes/screenshots/primer_tab.png
vignettes/screenshots/settings_constraints.png
vignettes/screenshots/template_allowed_regions_uniform.png
vignettes/screenshots/constraints_tab.png
vignettes/screenshots/view_selectors.png
data-raw/create_IMGT_choices.R
man/openPrimeRui-package.Rd
man/startApp.Rd
man/myCatch.Rd
man/withWarnings.Rd
inst/NEWS
inst/doc/openPrimeRui_vignette.Rmd
inst/doc/openPrimeRui_vignette.html
inst/doc/openPrimeRui_vignette.R
inst/shiny/ui.R
inst/shiny/server.R
inst/shiny/www/bootstrap.css
inst/shiny/www/favicon.ico
inst/shiny/www/custom_slider.js
inst/shiny/www/message-handler.js
inst/shiny/www/debounce.js
inst/shiny/www/style.css
inst/shiny/www/tooltip_customization.js
inst/shiny/www/images/MAFFT.png
inst/shiny/www/images/oligoarrayaux.png
inst/shiny/www/images/meltingtop.jpg
inst/shiny/www/images/minervampii2.jpg
inst/shiny/www/images/vienna.png
inst/shiny/www/images/docker.png
inst/shiny/www/images/logo.png
inst/shiny/www/images/primer_binding.png
inst/shiny/www/images/cologne.png
inst/shiny/www/images/logo_text.png
inst/shiny/www/images/github-logo.png
inst/shiny/help/contact.html
inst/shiny/help/references.html
inst/shiny/help/license.html
inst/shiny/help/disclaimer.html
inst/shiny/help/input/overview.html
inst/shiny/help/input/templates/allowed.html
inst/shiny/help/input/templates/overview.html
inst/shiny/help/input/primers/CSV_input.html
inst/shiny/help/input/primers/FASTA_input.html
inst/shiny/help/FAQ/ambiguities.html
inst/shiny/help/FAQ/design.html
inst/shiny/help/FAQ/tools.html
inst/shiny/help/FAQ/screencast.html
inst/shiny/help/evaluation/comparison.html
inst/shiny/help/evaluation/optimization.html
inst/shiny/help/evaluation/overview.html
inst/shiny/help/evaluation/optimization_templates.html
inst/shiny/help/evaluation/evaluation.html
inst/shiny/help/constraints/overview.html
inst/shiny/help/constraints/PCR_settings.html
inst/shiny/help/constraints/coverage/annealing_DeltaG.html
inst/shiny/help/constraints/coverage/primer_efficiency.html
inst/shiny/help/constraints/coverage/basic_primer_coverage.html
inst/shiny/help/constraints/coverage/codon_design.html
inst/shiny/help/constraints/coverage/coverage_model.html
inst/shiny/help/constraints/filters/secondary_structure.html
inst/shiny/help/constraints/filters/primer_specificity.html
inst/shiny/help/constraints/filters/self_complementarity.html
inst/shiny/help/constraints/filters/primer_coverage.html
inst/shiny/help/constraints/filters/primer_efficiency.html
inst/shiny/help/constraints/filters/run_length.html
inst/shiny/help/constraints/filters/overview.html
inst/shiny/help/constraints/filters/GC_content.html
inst/shiny/help/constraints/filters/repeat_length.html
inst/shiny/help/constraints/filters/GC_clamp.html
inst/shiny/help/constraints/filters/cross_complementarity.html
inst/shiny/help/constraints/filters/melting_temp_opti.html
inst/shiny/help/constraints/filters/primer_length.html
inst/shiny/help/constraints/filters/melting_temperature.html
inst/shiny/shiny_ui/ui_main_constraints.R
inst/shiny/shiny_ui/ui_side_analyze.R
inst/shiny/shiny_ui/ui_side_settings.R
inst/shiny/shiny_ui/ui_main_settings.R
inst/shiny/shiny_ui/ui_main_help.R
inst/shiny/shiny_ui/ui_side_templates.R
inst/shiny/shiny_ui/ui_side_download.R
inst/shiny/shiny_ui/ui_side_primers.R
inst/shiny/shiny_ui/ui_main_coverage.R
inst/shiny/shiny_ui/ui_main_templates.R
inst/shiny/shiny_ui/ui_main_comparison.R
inst/shiny/shiny_ui/ui_main_primers.R
inst/shiny/shiny_server/server_templates.R
inst/shiny/shiny_server/server_help.R
inst/shiny/shiny_server/server_download.R
inst/shiny/shiny_server/extra_IMGT_template_options.py
inst/shiny/shiny_server/extra_set_paths.R
inst/shiny/shiny_server/extra_IMGT_template_set_extractor.py
inst/shiny/shiny_server/server_filtering.R
inst/shiny/shiny_server/server_coverage.R
inst/shiny/shiny_server/server_constraints.R
inst/shiny/shiny_server/server_navigation.R
inst/shiny/shiny_server/server_settings.R
inst/shiny/shiny_server/server_comparison.R
inst/shiny/shiny_server/server_primers.R
inst/shiny/shiny_server/server_evaluate.R
inst/shiny/shiny_server/server_dimerization.R
inst/shiny/shiny_server/extra_shiny_backend.R
inst/extdata/IMGT_options/model.allele.fcode.txt
inst/extdata/IMGT_options/model.locusLike.txt
inst/extdata/IMGT_options/model.groupLike.txt
inst/extdata/IMGT_options/model.subgroup.txt
inst/extdata/IMGT_options/model.gene.id.species.txt
