openPrimeRui: Shiny Application for Multiplex PCR Primer Design and Analysis

A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.

Package details

AuthorMatthias Döring [aut, cre], Nico Pfeifer [aut]
Bioconductor views Software Technology
MaintainerMatthias Döring <[email protected]>
Package repositoryView on Bioconductor
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openPrimeRui documentation built on Nov. 11, 2018, 6 p.m.