estimCovCellGeneral: estimCovCellGeneral

In optimalFlow: optimalFlow

Description

Estimation of mean and covariance for a label in a partition.

Usage

estimCovCellGeneral(cell, cytometry, labels, type = "standard", alpha = 0.85)

Arguments

cell	Labell of the clsuter of interest.
cytometry	Data of the partition, without labels.
labels	Labels of the partition.
type	How to estimate covariance matrices of a cluster. 'standard' is for using cov(), while 'robust' is for using robustbase::covMcd.
alpha	Only when type = 'robust'. Indicates the value of alpha in robustbase::covMcd.

Value

A list containing:

mean

Mean of the cluster.

cov

Covariance of the cluster.

weight

Weight associated to the cluster.

type

Type of the cluster.

Examples

estimCovCellGeneral('Basophils', Cytometry1[,1:10], Cytometry1[,11])

optimalFlow documentation built on Nov. 8, 2020, 6:59 p.m.