| coloredGraph-class | Class "coloredGraph" |
| colorNodes | attach node coloring information to a graphNEL instance |
| graphcMAP | obtain a graph object corresponding to a cMAP pathway |
| plotExGraph | plot a gene network, coloring nodes according to relative... |
| pwayGraph-class | Class "pwayGraph" - extension to graphNEL for pathway... |
| reduceES | collapse the assay values in an ExpressionSet to a set of... |
| rendercMAP | Render pathways from cMAP |
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