graphcMAP: obtain a graph object corresponding to a cMAP pathway

Description Usage Arguments Details Value Author(s) Examples

Description

obtain a graph object corresponding to a cMAP pathway

Usage

1
graphcMAP(pname)

Arguments

pname

character token identifying a KEGG or cMAP pathway

Details

reuses code from pathRender but emits a graphNEL-class instance with some additional information for rendering

Value

an instance of pwayGraph, which extends graphNEL

Author(s)

Vince Carey <[email protected]>

Examples

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G1 = graphcMAP("p53pathway")
G1
nodes(G1)
if (require(Rgraphviz)) plot(G1)

pathRender documentation built on Oct. 31, 2019, 5:27 a.m.