pdmclass: Classification of Microarray Samples using Penalized Discriminant Methods

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This package can be used to classify microarray data using one of three penalized regression methods; partial least squares, principal components regression, or ridge regression.

Author
James W. MacDonald, Debashis Ghosh, based in part on pls code of Mike Denham
Date of publication
None
Maintainer
James W. MacDonald <jmacdon@u.washington.edu>
License
Artistic-2.0
Version
1.46.0

View on Bioconductor

Man pages

my.svd
A Function to Perform Singular Value Decomposition
pdmClass
Function to Classify Microarray Data using Penalized...
pdmClass.cv
Leave One Out Crossvalidation
pdmGenes
A Function to output the Top Ranked Genes from a Penalized...
pls1c
Function to Fit Modified Helland Algorithm
predict.pls
Classify Observations using Penalized Discriminant Methods
svdpls1c
Classify Microarray Data by Partial Least Squares
svdr
Classify Microarray Data by Principal Components Regression

Files in this package

pdmclass/DESCRIPTION
pdmclass/NAMESPACE
pdmclass/R
pdmclass/R/pdmclass.R
pdmclass/R/zzz.R
pdmclass/build
pdmclass/build/vignette.rds
pdmclass/inst
pdmclass/inst/doc
pdmclass/inst/doc/pdmclass.R
pdmclass/inst/doc/pdmclass.Rnw
pdmclass/inst/doc/pdmclass.pdf
pdmclass/man
pdmclass/man/my.svd.Rd
pdmclass/man/pdmClass.Rd
pdmclass/man/pdmClass.cv.Rd
pdmclass/man/pdmGenes.Rd
pdmclass/man/pls1c.Rd
pdmclass/man/predict.pls.Rd
pdmclass/man/svdpls1c.Rd
pdmclass/man/svdr.Rd
pdmclass/vignettes
pdmclass/vignettes/pdmclass.Rnw
pdmclass/vignettes/pdmclass.bib