pepXMLTab: Parsing pepXML files and filter based on peptide FDR.

Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.

AuthorXiaojing Wang
Date of publicationNone
MaintainerXiaojing Wang <xiaojing.wang@vanderbilt.edu>
LicenseArtistic-2.0
Version1.8.0

View on Bioconductor

Files in this package

pepXMLTab/DESCRIPTION
pepXMLTab/NAMESPACE
pepXMLTab/NEWS
pepXMLTab/R
pepXMLTab/R/PSMfilter.R pepXMLTab/R/pepXML2tab.R
pepXMLTab/build
pepXMLTab/build/vignette.rds
pepXMLTab/inst
pepXMLTab/inst/doc
pepXMLTab/inst/doc/pepXMLTab.R
pepXMLTab/inst/doc/pepXMLTab.Rnw
pepXMLTab/inst/doc/pepXMLTab.pdf
pepXMLTab/inst/extdata
pepXMLTab/inst/extdata/pepxml
pepXMLTab/inst/extdata/pepxml/Mascot.pepXML
pepXMLTab/inst/extdata/pepxml/Myrimatch.pepXML
pepXMLTab/inst/extdata/pepxml/SEQUEST.pepXML
pepXMLTab/inst/extdata/pepxml/XTandem.pepXML
pepXMLTab/inst/unitTests
pepXMLTab/inst/unitTests/test_PSMfilter.R
pepXMLTab/inst/unitTests/test_pepXML2tab.R
pepXMLTab/inst/unitTests/tmp.pepXML
pepXMLTab/man
pepXMLTab/man/PSMfilter.Rd pepXMLTab/man/pepXML2tab.Rd
pepXMLTab/tests
pepXMLTab/tests/runTests.R
pepXMLTab/vignettes
pepXMLTab/vignettes/pepXMLTab.Rnw
pepXMLTab/vignettes/pepXMLTab.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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