API for periodicDNA
Set of tools to identify periodic occurrences of k-mers in DNA sequences
| Global functions | |
|---|---|
| DNAStringSet2GRanges | Source code |
| alignToTSS | Source code |
| binWrapper | Source code |
| ce11_ATACseq | Man page |
| ce11_TSSs | Man page |
| ce11_WW_10bp | Man page |
| ce11_all_REs | Man page |
| ce11_proms | Man page |
| ce11_proms_seqs | Man page |
| checkPeriodFromFourier | Source code |
| chunkWrapper | Source code |
| cleanUpDirectory | Source code |
| deconvolveBidirectionalPromoters | Source code |
| getChunks | Source code |
| getCovMatrix | Source code |
| getPeriodicity | Man page Source code |
| getPeriodicity.DNAString | Man page Source code |
| getPeriodicity.DNAStringSet | Man page Source code |
| getPeriodicity.GRanges | Man page Source code |
| getPeriodicityTrack | Man page Source code |
| getPeriodicityWithIterations | Man page Source code |
| getPeriodicityWithIterations.DNAStringSet | Man page Source code |
| getPeriodicityWithIterations.GRanges | Man page Source code |
| getPeriodsMetrics | Source code |
| na.remove | Source code |
| na.replace | Source code |
| namedListToLongFormat | Source code |
| normalizeHistogram | Source code |
| partitionGenome | Source code |
| plotAggregateCoverage | Man page Source code |
| plotAggregateCoverage.CompressedRleList | Man page Source code |
| plotAggregateCoverage.SimpleRleList | Man page Source code |
| plotAggregateCoverage.list | Man page Source code |
| plotPeriodicityResults | Man page Source code |
| plotWithIterations | Source code |
| scaleBigWigs | Source code |
| setUpBPPARAM | Man page Source code |
| shuffleSeq | Source code |
| smoothBigWig | Source code |
| theme_ggplot2 | Man page Source code |
| withSeq | Source code |
