pickgene: Adaptive Gene Picking for Microarray Expression Data Analysis
Version 1.48.0

Functions to Analyze Microarray (Gene Expression) Data.

AuthorBrian S. Yandell <yandell@stat.wisc.edu>
Bioconductor views DifferentialExpression Microarray
Date of publicationNone
MaintainerBrian S. Yandell <yandell@stat.wisc.edu>
LicenseGPL (>= 2)
Version1.48.0
URL http://www.stat.wisc.edu/~yandell/statgen
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("pickgene")

Popular man pages

em.ggb: EM calculation for Gamma-Gamma-Bernoulli Model
model.pickgene: Create Model Matrix for Orthogonal Contrasts
oddsplot: Odds Plot for Differential Microarray Expression
pickgene: Plot and Pick Genes based on Differential Expression
pickgene-internal: Internal pickgene functions.
robustscale: Robust Estimation of Median (center) and MAD (scale)
Simulation.pickgene: Yi Lin's simulations for microarray analysis
See all...

All man pages Function index File listing

Man pages

em.ggb: EM calculation for Gamma-Gamma-Bernoulli Model
model.pickgene: Create Model Matrix for Orthogonal Contrasts
oddsplot: Odds Plot for Differential Microarray Expression
pickgene: Plot and Pick Genes based on Differential Expression
pickgene-internal: Internal pickgene functions.
robustscale: Robust Estimation of Median (center) and MAD (scale)
Simulation.pickgene: Yi Lin's simulations for microarray analysis

Functions

Files

DESCRIPTION
NAMESPACE
R
R/chip.R
R/density.R
R/newton.R
R/npdiag.R
R/twoarray.R
R/yandell.R
R/yilin.R
build
build/vignette.rds
inst
inst/doc
inst/doc/pickgene.Rnw
inst/doc/pickgene.pdf
man
man/Simulation.pickgene.Rd
man/em.ggb.Rd
man/model.pickgene.Rd
man/oddsplot.Rd
man/pickgene-internal.Rd
man/pickgene.Rd
man/robustscale.Rd
vignettes
vignettes/pickgene.Rnw
pickgene documentation built on May 20, 2017, 10:28 p.m.

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