pickgene: Adaptive Gene Picking for Microarray Expression Data Analysis

Share:

Functions to Analyze Microarray (Gene Expression) Data.

Author
Brian S. Yandell <yandell@stat.wisc.edu>
Date of publication
None
Maintainer
Brian S. Yandell <yandell@stat.wisc.edu>
License
GPL (>= 2)
Version
1.46.0
URLs

View on Bioconductor

Man pages

em.ggb
EM calculation for Gamma-Gamma-Bernoulli Model
model.pickgene
Create Model Matrix for Orthogonal Contrasts
oddsplot
Odds Plot for Differential Microarray Expression
pickgene
Plot and Pick Genes based on Differential Expression
pickgene-internal
Internal pickgene functions.
robustscale
Robust Estimation of Median (center) and MAD (scale)
Simulation.pickgene
Yi Lin's simulations for microarray analysis

Files in this package

pickgene/DESCRIPTION
pickgene/NAMESPACE
pickgene/R
pickgene/R/chip.R
pickgene/R/density.R
pickgene/R/newton.R
pickgene/R/npdiag.R
pickgene/R/twoarray.R
pickgene/R/yandell.R
pickgene/R/yilin.R
pickgene/build
pickgene/build/vignette.rds
pickgene/inst
pickgene/inst/doc
pickgene/inst/doc/pickgene.Rnw
pickgene/inst/doc/pickgene.pdf
pickgene/man
pickgene/man/Simulation.pickgene.Rd
pickgene/man/em.ggb.Rd
pickgene/man/model.pickgene.Rd
pickgene/man/oddsplot.Rd
pickgene/man/pickgene-internal.Rd
pickgene/man/pickgene.Rd
pickgene/man/robustscale.Rd
pickgene/vignettes
pickgene/vignettes/pickgene.Rnw