pmm: Parallel Mixed Model

Share:

The Parallel Mixed Model (PMM) approach is suitable for hit selection and cross-comparison of RNAi screens generated in experiments that are performed in parallel under several conditions. For example, we could think of the measurements or readouts from cells under RNAi knock-down, which are infected with several pathogens or which are grown from different cell lines.

Author
Anna Drewek
Date of publication
None
Maintainer
Anna Drewek <adrewek@stat.math.ethz.ch>
License
GPL-3
Version
1.6.0

View on Bioconductor

Man pages

hitheatmap
Visualization of the PMM results
kinome
Example Data from InfectX
pmm
Fitting the PMM
pmm-package
The PMM-Package
sharedness
Sharedness Score

Files in this package

pmm/DESCRIPTION
pmm/NAMESPACE
pmm/NEWS
pmm/R
pmm/R/hitheatmap.R
pmm/R/pmm.R
pmm/R/pmm_utils.R
pmm/R/sharedness.R
pmm/build
pmm/build/vignette.rds
pmm/data
pmm/data/kinome.rda
pmm/inst
pmm/inst/doc
pmm/inst/doc/pmm-package.R
pmm/inst/doc/pmm-package.Rnw
pmm/inst/doc/pmm-package.pdf
pmm/man
pmm/man/hitheatmap.Rd
pmm/man/kinome.Rd
pmm/man/pmm-package.Rd
pmm/man/pmm.Rd
pmm/man/sharedness.Rd
pmm/vignettes
pmm/vignettes/pmm-package.Rnw