pmm: Parallel Mixed Model

The Parallel Mixed Model (PMM) approach is suitable for hit selection and cross-comparison of RNAi screens generated in experiments that are performed in parallel under several conditions. For example, we could think of the measurements or readouts from cells under RNAi knock-down, which are infected with several pathogens or which are grown from different cell lines.

Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("pmm")
AuthorAnna Drewek
Bioconductor views Regression SystemsBiology
Date of publicationNone
MaintainerAnna Drewek <adrewek@stat.math.ethz.ch>
LicenseGPL-3
Version1.8.0

View on Bioconductor

Files

DESCRIPTION
NAMESPACE
NEWS
R
R/hitheatmap.R R/pmm.R R/pmm_utils.R R/sharedness.R
build
build/vignette.rds
data
data/kinome.rda
inst
inst/doc
inst/doc/pmm-package.R
inst/doc/pmm-package.Rnw
inst/doc/pmm-package.pdf
man
man/hitheatmap.Rd man/kinome.Rd man/pmm-package.Rd man/pmm.Rd man/sharedness.Rd
vignettes
vignettes/pmm-package.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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