DRProfSet: DRProfSet is a class for managing dose-response information...

In pogos: PharmacOGenomics Ontology Support

Description

DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset

getDrugs extracts drug list

DRProfSet manages all data from a given cell line from a pharmacogenomics source

Usage

getDrugs(x)

DRProfSet(cell_line = "MCF7", dataset = "CCLE")

## S4 method for signature 'DRProfSet,missing'
plot(x, y, ...)

Arguments

x	instance of DRProfSet
cell_line	character(1) cell line name, entries in cell_lines_v1
dataset	character(1) resource name, entries in datasets_v1
y	for plot: not used
...	not used

Value

getDrugs: character vector

instance of DRProfSet

Examples

if (interactive()) trs = DRTraceSet() else trs = iriCCLE()
ps = traces(trs)[[1]]
ps
getDrugs(ps)
if (interactive()) DRProfSet()

pogos documentation built on Nov. 8, 2020, 8:11 p.m.