API for proDA
Differential Abundance Analysis of Label-Free Mass Spectrometry Data
| Global functions | |
|---|---|
| $,proDAFit-method | Man page |
| $<-,proDAFit-method | Man page |
| %zero_dom_mat_mult% | Man page |
| .DollarNames.proDAFit | Man page Source code |
| .proDAFit | Man page |
| `%zero_dom_mat_mult%` | Source code |
| abundances | Man page |
| abundances,proDAFit-method | Man page |
| accessor_methods | Man page |
| as_replicate | Man page Source code |
| calculate_sigma2_parameters | Source code |
| calculate_skew_correction_factors | Source code |
| check_valid_model_matrix | Source code |
| coefficient_variance_matrices | Man page |
| coefficient_variance_matrices,proDAFit-method | Man page |
| coefficients | Man page |
| coefficients,proDAFit-method | Man page |
| convergence | Man page |
| convergence,proDAFit-method | Man page |
| convert_chr_vec_to_model_matrix | Source code |
| convert_formula_to_model_matrix | Source code |
| design,proDAFit-method | Man page |
| dist_approx | Man page |
| dist_approx,ANY-method | Man page |
| dist_approx,SummarizedExperiment-method | Man page |
| dist_approx,proDAFit-method | Man page |
| dist_approx_impl | Man page |
| dist_approx_mean_var | Source code |
| distance_sq | Man page Source code |
| dollar_methods | Man page |
| dropout_curves | Source code |
| dt.scaled | Source code |
| feature_parameters | Man page |
| feature_parameters,proDAFit-method | Man page |
| fit_feature_parameters | Source code |
| fit_parameters_loop | Source code |
| generate_synthetic_data | Man page Source code |
| grad_fnc | Source code |
| has_intercept | Source code |
| hess_fnc | Source code |
| hyper_parameters | Man page |
| hyper_parameters,proDAFit-method | Man page |
| inv_mills_ratio | Source code |
| invert_hessian_matrix | Source code |
| invprobit | Man page Source code |
| invprobit_fast | Man page Source code |
| location_prior | Source code |
| log_parameters | Source code |
| median_normalization | Man page Source code |
| mply_dbl | Man page Source code |
| msply_dbl | Man page Source code |
| objective_fnc | Source code |
| parse_contrast | Source code |
| pd_lm | Man page Source code |
| pd_lm.fit | Man page Source code |
| pd_row_f_test | Man page Source code |
| pd_row_t_test | Man page Source code |
| predict,proDAFit-method | Man page |
| proDA | Man page Source code |
| proDAFit | Source code |
| proDAFit-class | Man page |
| proDA_package | Man page |
| reference_level | Man page |
| reference_level,proDAFit-method | Man page |
| result_names | Man page |
| result_names,proDAFit-method | Man page |
| run_nested_model_comparison | Source code |
| run_wald_parameter_test | Source code |
| test_diff | Man page Source code |
| variance_prior | Source code |
