Files in proDA

Differential Abundance Analysis of Label-Free Mass Spectrometry Data

README.md R/stats_functions.R R/calculate_distance.R R/util.R R/AllGenerics.R R/pd_lm.R R/completion.R R/simple_tests.R R/generate_synthetic_data.R R/AllClasses.R R/proDA.R R/methods.R R/normalization.R R/test_diff.R R/predict.R vignettes/data-import.Rmd vignettes/Introduction.Rmd man/mply_dbl.Rd man/reference_level.Rd man/accessor_methods.Rd man/grapes-zero_dom_mat_mult-grapes.Rd man/pd_lm.Rd man/coefficients.Rd man/proDA_package.Rd man/dist_approx.Rd man/pd_row_t_test.Rd man/result_names.Rd man/feature_parameters.Rd man/proDA.Rd man/cash-proDAFit-method.Rd man/proDAFit-class.Rd man/predict-proDAFit-method.Rd man/pd_lm.fit.Rd man/convergence.Rd man/coefficient_variance_matrices.Rd man/abundances.Rd man/generate_synthetic_data.Rd man/hyper_parameters.Rd man/invprobit_fast.Rd man/test_diff.Rd man/distance_sq.Rd man/as_replicate.Rd man/median_normalization.Rd man/dist_approx_impl.Rd man/invprobit.Rd tests/testthat.R tests/testthat/test-calculate_distance.R tests/testthat/test-pd_lm.R tests/testthat/test-normalization.R tests/testthat/test-proDAFit_S4.R tests/testthat/test-proDA.R tests/testthat/test-test_diff.R tests/testthat/test-design_parsing.R inst/doc/data-import.R inst/doc/data-import.Rmd inst/doc/Introduction.R inst/doc/Introduction.Rmd inst/site/build-site.R