procoil: Prediction of Oligomerization of Coiled Coil Proteins
Version 2.4.0

The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.

AuthorUlrich Bodenhofer
Bioconductor views Classification Proteomics SupportVectorMachine
Date of publicationNone
MaintainerUlrich Bodenhofer <bodenhofer@bioinf.jku.at>
LicenseGPL (>= 2)
Version2.4.0
URL http://www.bioinf.jku.at/software/procoil/
Package repositoryView on Bioconductor
InstallationInstall the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("procoil")

Getting started

Package overview

Popular man pages

CCModel-class: Class "CCModel"
CCModel-FileOps: Reading and writing of coiled coil prediction model from/to...
CCProfile-class: Class "CCProfile"
plot-methods: Plotting prediction profiles
predict-methods: Predict oligomerization of one or more coiled coil segments
procoil-package: Prediction of Oligomerization of Coiled Coil Proteins
See all...

All man pages Function index File listing

Man pages

CCModel-class: Class "CCModel"
CCModel-FileOps: Reading and writing of coiled coil prediction model from/to...
CCProfile-class: Class "CCProfile"
plot-methods: Plotting prediction profiles
predict-methods: Predict oligomerization of one or more coiled coil segments
procoil-package: Prediction of Oligomerization of Coiled Coil Proteins

Functions

Files

DESCRIPTION
NAMESPACE
R
R/AllClasses.R
R/access-methods.R
R/fitted-methods.R
R/heatmap-methods.R
R/plot-methods.R
R/predict-methods.R
R/profile-methods.R
R/readCCModel.R
R/show-methods.R
R/weights-methods.R
R/writeCCModel.R
build
build/vignette.rds
data
data/PrOCoilModel.RData
data/PrOCoilModelBA.RData
inst
inst/CITATION
inst/NEWS
inst/doc
inst/doc/procoil.R
inst/doc/procoil.Rnw
inst/doc/procoil.pdf
inst/examples
inst/examples/testModel.CCModel
man
man/CCModel-FileOps.Rd
man/CCModel-class.Rd
man/CCProfile-class.Rd
man/plot-methods.Rd
man/predict-methods.Rd
man/procoil-package.Rd
vignettes
vignettes/GCN4output.png
vignettes/Input.png
vignettes/JKU_EN_noName.pdf
vignettes/Marcoil.png
vignettes/MarcoilOut.png
vignettes/MarcoilPreProc.png
vignettes/MarcoilPreProcOut.png
vignettes/MutationAnalysisInput.png
vignettes/MutationAnalysisOutput.png
vignettes/PairCoil2input.png
vignettes/PairCoil2output.png
vignettes/PairCoil2sel.png
vignettes/bioinf-article.txi
vignettes/bioinf-bar.png
vignettes/bioinf.cls
vignettes/procoil.Rnw
procoil documentation built on May 20, 2017, 10:03 p.m.

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