procoil: Prediction of Oligomerization of Coiled Coil Proteins

The package allows for predicting whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. Additionally to the prediction itself, a prediction profile is computed which allows for determining the strengths to which the individual residues are indicative for either class. Prediction profiles can also be visualized as curves or heatmaps.

Author
Ulrich Bodenhofer
Date of publication
None
Maintainer
Ulrich Bodenhofer <bodenhofer@bioinf.jku.at>
License
GPL (>= 2)
Version
2.2.0
URLs

View on Bioconductor

Man pages

CCModel-class
Class "CCModel"
CCModel-FileOps
Reading and writing of coiled coil prediction model from/to...
CCProfile-class
Class "CCProfile"
plot-methods
Plotting prediction profiles
predict-methods
Predict oligomerization of one or more coiled coil segments
procoil-package
Prediction of Oligomerization of Coiled Coil Proteins

Files in this package

procoil/DESCRIPTION
procoil/NAMESPACE
procoil/R
procoil/R/AllClasses.R
procoil/R/access-methods.R
procoil/R/fitted-methods.R
procoil/R/heatmap-methods.R
procoil/R/plot-methods.R
procoil/R/predict-methods.R
procoil/R/profile-methods.R
procoil/R/readCCModel.R
procoil/R/show-methods.R
procoil/R/weights-methods.R
procoil/R/writeCCModel.R
procoil/build
procoil/build/vignette.rds
procoil/data
procoil/data/PrOCoilModel.RData
procoil/data/PrOCoilModelBA.RData
procoil/inst
procoil/inst/CITATION
procoil/inst/NEWS
procoil/inst/doc
procoil/inst/doc/procoil.R
procoil/inst/doc/procoil.Rnw
procoil/inst/doc/procoil.pdf
procoil/inst/examples
procoil/inst/examples/testModel.CCModel
procoil/man
procoil/man/CCModel-FileOps.Rd
procoil/man/CCModel-class.Rd
procoil/man/CCProfile-class.Rd
procoil/man/plot-methods.Rd
procoil/man/predict-methods.Rd
procoil/man/procoil-package.Rd
procoil/vignettes
procoil/vignettes/GCN4output.png
procoil/vignettes/Input.png
procoil/vignettes/JKU_EN_noName.pdf
procoil/vignettes/Marcoil.png
procoil/vignettes/MarcoilOut.png
procoil/vignettes/MarcoilPreProc.png
procoil/vignettes/MarcoilPreProcOut.png
procoil/vignettes/MutationAnalysisInput.png
procoil/vignettes/MutationAnalysisOutput.png
procoil/vignettes/PairCoil2input.png
procoil/vignettes/PairCoil2output.png
procoil/vignettes/PairCoil2sel.png
procoil/vignettes/bioinf-article.txi
procoil/vignettes/bioinf-bar.png
procoil/vignettes/bioinf.cls
procoil/vignettes/procoil.Rnw