model_mouse_full: The full mouse linear model underlying PROGENy
In progeny: Pathway RespOnsive GENes for activity inference from gene expression
Description
Format
Source
Examples
Description
MGI gene symbols in rows, pathways in columns. Pathway activity inference
works by matrix multiplication of gene expression with the model.
Format
The full mouse model contains 17426 genes, associated pathways,
weight and the p-value.
- gene
gene names in HGNC symbols
- pathway
names of PROGENy pathways
- weight
z-scores for a given gene
- p.value
significance of gene in a pathway
Source
https://www.ncbi.nlm.nih.gov/pubmed/31525460
Examples
1
get("model_mouse_full", envir = .GlobalEnv)
progeny documentation built on Nov. 8, 2020, 6:51 p.m.
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Description Format Source Examples
Description
MGI gene symbols in rows, pathways in columns. Pathway activity inference works by matrix multiplication of gene expression with the model.
Format
The full mouse model contains 17426 genes, associated pathways, weight and the p-value.
- gene
gene names in HGNC symbols
- pathway
names of PROGENy pathways
- weight
z-scores for a given gene
- p.value
significance of gene in a pathway
Source
https://www.ncbi.nlm.nih.gov/pubmed/31525460
Examples
1 | get("model_mouse_full", envir = .GlobalEnv)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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