ips-sample-data: IPS sample data

In proteinProfiles: Protein Profiling

Description

IPS sample data, separated in protein ratios and annotation.

Usage

data(ips_sample)

Format

ratios

Matrix with protein profiles. Rows correspond to proteins, columns to samples.

annotation

Data frame with annotation columns, with row names matching those of ‘ratios.’

Examples

  data(ips_sample)

  str(ratios)

  str(annotation)

Example output

 num [1:247, 1:10] 1.77 -0.974 0.177 -0.688 0.857 -0.418 -0.367 NA 0.871 0.672 ...
 - attr(*, "dimnames")=List of 2
  ..$ : chr [1:247] "46" "148" "169" "262" ...
  ..$ : chr [1:10] "T3R1" "T3R2" "T6R1" "T6R2" ...
'data.frame':	247 obs. of  8 variables:
 $ Uniprot           : chr  "P84099" "A2A9X6" "A2ABW8" "A2AH73" ...
 $ Protein.Short.Name: chr  "RL19" "A2A9X6" "A2ABW8" "A2AH73" ...
 $ Gene.Name         : chr  "Rpl19" "Nt5c" "Rps21" "Pgd" ...
 $ Protein.Name      : chr  "60S ribosomal protein L19" "5,3-nucleotidase, cytosolic" "40S ribosomal protein S21" "6-phosphogluconate dehydrogenase, decarboxylating" ...
 $ GOCC              : chr  "intracellular;ribosome;large ribosomal subunit;cytosolic large ribosomal subunit;ribonucleoprotein complex;macr"| __truncated__ "nucleus;cytoplasm;mitochondrion;organelle;membrane-bounded organelle;intracellular organelle;intracellular memb"| __truncated__ "intracellular;cytoplasm;ribosome;small ribosomal subunit;cytosolic small ribosomal subunit;ribonucleoprotein co"| __truncated__ "cytoplasm;intracellular part;cell part" ...
 $ GOBP              : chr  "translation;metabolic process;biosynthetic process;macromolecule biosynthetic process;cellular process;protein "| __truncated__ "nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;pyrimidine nucleotide metabolic process;p"| __truncated__ "translation;metabolic process;biosynthetic process;macromolecule biosynthetic process;cellular process;protein "| __truncated__ "carbohydrate metabolic process;monosaccharide metabolic process;glucose metabolic process;glucose catabolic pro"| __truncated__ ...
 $ GOMF              : chr  "structural constituent of ribosome;structural molecule activity" "nucleotide binding;catalytic activity;binding;nucleotidase activity;5'-nucleotidase activity;hydrolase activity"| __truncated__ "structural constituent of ribosome;structural molecule activity;binding;protein binding;protein N-terminus bind"| __truncated__ "nucleotide binding;catalytic activity;phosphogluconate dehydrogenase (decarboxylating) activity;binding;oxidore"| __truncated__ ...
 $ KEGG              : chr  "Ribosome" "Purine metabolism;Pyrimidine metabolism;Nicotinate and nicotinamide metabolism" "Ribosome" "Pentose phosphate pathway;Glutathione metabolism" ...

proteinProfiles documentation built on Nov. 8, 2020, 7:46 p.m.